Hb_000017_230

Information

Type -
Description -
Location Contig17: 299026-302303
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09710g
description POPTRDRAFT_1066853; hypothetical protein
nr
ID KDP25402.1
description hypothetical protein JCGZ_20558 [Jatropha curcas]
swissprot
ID Q9CAJ9
description BTB/POZ domain-containing protein At1g63850 OS=Arabidopsis thaliana GN=At1g63850 PE=1 SV=1
trembl
ID A0A067JNE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20558 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15842: 299025-301707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000017_230 0.0 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
2 Hb_121089_030 0.0542252688 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
3 Hb_021165_010 0.0593026016 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
4 Hb_001552_030 0.0615482917 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_092000_010 0.0618712359 - - kelch repeat-containing F-box family protein [Populus trichocarpa]
6 Hb_001085_290 0.0645264298 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
7 Hb_000088_050 0.0761470998 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
8 Hb_000212_420 0.0781097178 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
9 Hb_085742_010 0.0796513607 - - hypothetical protein POPTR_0005s05170g [Populus trichocarpa]
10 Hb_000702_090 0.0797249366 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
11 Hb_010042_030 0.0800166227 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
12 Hb_000322_080 0.0801201502 - - hypothetical protein JCGZ_07423 [Jatropha curcas]
13 Hb_002007_260 0.0803106204 - - beta-mannosidase, putative [Ricinus communis]
14 Hb_001114_110 0.0811151625 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
15 Hb_001257_030 0.0819848065 - - PREDICTED: serine/threonine-protein kinase Nek5 [Jatropha curcas]
16 Hb_003498_080 0.0821993304 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
17 Hb_001856_180 0.0830212911 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
18 Hb_001307_240 0.0832881402 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
19 Hb_001246_130 0.0835800841 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
20 Hb_060980_010 0.0848132634 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000017_230 Hb_000017_230 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_021165_010 Hb_021165_010 Hb_000017_230--Hb_021165_010 Hb_001552_030 Hb_001552_030 Hb_000017_230--Hb_001552_030 Hb_092000_010 Hb_092000_010 Hb_000017_230--Hb_092000_010 Hb_001085_290 Hb_001085_290 Hb_000017_230--Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_000017_230--Hb_000088_050 Hb_030982_010 Hb_030982_010 Hb_121089_030--Hb_030982_010 Hb_121089_030--Hb_021165_010 Hb_000320_290 Hb_000320_290 Hb_121089_030--Hb_000320_290 Hb_121089_030--Hb_001552_030 Hb_010042_030 Hb_010042_030 Hb_121089_030--Hb_010042_030 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_001488_220 Hb_001488_220 Hb_001552_030--Hb_001488_220 Hb_001552_030--Hb_001085_290 Hb_004109_370 Hb_004109_370 Hb_001552_030--Hb_004109_370 Hb_002784_030 Hb_002784_030 Hb_001552_030--Hb_002784_030 Hb_002045_250 Hb_002045_250 Hb_092000_010--Hb_002045_250 Hb_001935_160 Hb_001935_160 Hb_092000_010--Hb_001935_160 Hb_092000_010--Hb_001085_290 Hb_092000_010--Hb_000088_050 Hb_085742_010 Hb_085742_010 Hb_092000_010--Hb_085742_010 Hb_001085_290--Hb_000088_050 Hb_002007_260 Hb_002007_260 Hb_001085_290--Hb_002007_260 Hb_001085_290--Hb_060980_010 Hb_001085_290--Hb_085742_010 Hb_000088_050--Hb_085742_010 Hb_001377_350 Hb_001377_350 Hb_000088_050--Hb_001377_350 Hb_001381_050 Hb_001381_050 Hb_000088_050--Hb_001381_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94264 8.37334 8.95437 10.8339 3.9221 6.66999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41577 2.88609 4.96923 8.70971 7.12516

CAGE analysis