Hb_001377_350

Information

Type -
Description -
Location Contig1377: 324113-329349
Sequence    

Annotation

kegg
ID rcu:RCOM_0716980
description importin-alpha re-exporter, putative
nr
ID XP_012083195.1
description PREDICTED: exportin-2 [Jatropha curcas]
swissprot
ID Q9ZPY7
description Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=2 SV=1
trembl
ID A0A067K9H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14245 PE=4 SV=1
Gene Ontology
ID GO:0008536
description importin-alpha re-exporter family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10429: 324418-327352 , PASA_asmbl_10430: 324418-329324 , PASA_asmbl_10431: 327733-327950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_350 0.0 - - PREDICTED: exportin-2 [Jatropha curcas]
2 Hb_000809_230 0.0473420006 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
3 Hb_002749_060 0.0533334376 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
4 Hb_002890_130 0.0558904534 - - tip120, putative [Ricinus communis]
5 Hb_000261_480 0.0572877181 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
6 Hb_003544_050 0.05920524 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
7 Hb_000003_100 0.0618323466 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
8 Hb_004679_030 0.0645100287 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
9 Hb_011819_020 0.0666033425 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
10 Hb_000537_050 0.0667366177 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
11 Hb_004208_050 0.0668067044 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
12 Hb_012286_040 0.0672530764 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
13 Hb_003280_020 0.0679203014 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
14 Hb_005563_060 0.0698434606 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
15 Hb_009296_040 0.0699764373 - - hypothetical protein L484_007435 [Morus notabilis]
16 Hb_001377_100 0.070907413 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
17 Hb_004019_120 0.072663895 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
18 Hb_007994_010 0.0731119576 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
19 Hb_004048_120 0.0737733726 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
20 Hb_004374_110 0.0746014418 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_350 Hb_001377_350 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_002749_060 Hb_002749_060 Hb_001377_350--Hb_002749_060 Hb_002890_130 Hb_002890_130 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_004679_030 Hb_004679_030 Hb_000809_230--Hb_004679_030 Hb_000809_230--Hb_003544_050 Hb_000809_230--Hb_002749_060 Hb_007994_010 Hb_007994_010 Hb_000809_230--Hb_007994_010 Hb_009296_040 Hb_009296_040 Hb_000809_230--Hb_009296_040 Hb_003280_020 Hb_003280_020 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_011819_020 Hb_011819_020 Hb_002749_060--Hb_011819_020 Hb_004048_120 Hb_004048_120 Hb_002749_060--Hb_004048_120 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_002890_130--Hb_000003_100 Hb_002890_130--Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_000261_480--Hb_011819_020 Hb_000261_480--Hb_004048_120 Hb_000261_480--Hb_003280_020 Hb_000140_210 Hb_000140_210 Hb_003544_050--Hb_000140_210 Hb_003544_050--Hb_009296_040 Hb_003544_050--Hb_002749_060 Hb_003544_050--Hb_004679_030 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.01744 7.79304 5.62392 8.58528 4.70635 7.15527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15677 3.27768 6.8487 9.71651 10.1068

CAGE analysis