Hb_011819_020

Information

Type -
Description -
Location Contig11819: 33927-73070
Sequence    

Annotation

kegg
ID vvi:100266278
description uncharacterized LOC100266278
nr
ID XP_012084282.1
description PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19775 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05436: 33952-72790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011819_020 0.0 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
2 Hb_002890_130 0.0393450143 - - tip120, putative [Ricinus communis]
3 Hb_000261_480 0.0447091431 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
4 Hb_000317_100 0.0488061467 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
5 Hb_002749_060 0.0522806226 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
6 Hb_003280_020 0.0531021785 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
7 Hb_005215_010 0.0557661871 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
8 Hb_004048_120 0.0570442384 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
9 Hb_065500_020 0.0576176518 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
10 Hb_004208_050 0.0586070221 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
11 Hb_002411_110 0.0607865215 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
12 Hb_000494_050 0.0615300657 - - cationic amino acid transporter, putative [Ricinus communis]
13 Hb_060980_010 0.0640000234 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_012518_070 0.064683049 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 isoform X1 [Jatropha curcas]
15 Hb_012286_040 0.0648676222 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
16 Hb_002874_110 0.0650180435 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
17 Hb_027506_010 0.0660293987 - - PREDICTED: cullin-4 [Jatropha curcas]
18 Hb_001377_350 0.0666033425 - - PREDICTED: exportin-2 [Jatropha curcas]
19 Hb_016172_030 0.068498295 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
20 Hb_012055_040 0.0691512244 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_011819_020 Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_011819_020--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_000317_100 Hb_000317_100 Hb_011819_020--Hb_000317_100 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_005215_010 Hb_005215_010 Hb_011819_020--Hb_005215_010 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_002890_130--Hb_000317_100 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_002890_130--Hb_000261_480 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350 Hb_000317_100--Hb_005215_010 Hb_003040_050 Hb_003040_050 Hb_000317_100--Hb_003040_050 Hb_000317_100--Hb_002411_110 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_002749_060--Hb_003280_020 Hb_000890_070 Hb_000890_070 Hb_002749_060--Hb_000890_070 Hb_002749_060--Hb_004048_120 Hb_002749_060--Hb_001377_350 Hb_065500_020 Hb_065500_020 Hb_002749_060--Hb_065500_020 Hb_003280_020--Hb_004048_120 Hb_002025_330 Hb_002025_330 Hb_003280_020--Hb_002025_330 Hb_012330_010 Hb_012330_010 Hb_003280_020--Hb_012330_010 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.76106 12.6982 10.0978 14.4659 10.5818 9.88282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81578 6.83273 9.74953 16.5571 15.5587

CAGE analysis