Hb_002890_130

Information

Type -
Description -
Location Contig2890: 209145-223407
Sequence    

Annotation

kegg
ID rcu:RCOM_0495920
description tip120, putative
nr
ID XP_002527826.1
description tip120, putative [Ricinus communis]
swissprot
ID Q8L5Y6
description Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana GN=CAND1 PE=1 SV=1
trembl
ID B9SPA7
description Tip120, putative OS=Ricinus communis GN=RCOM_0495920 PE=4 SV=1
Gene Ontology
ID GO:0005618
description cullin-associated nedd8-dissociated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30205: 209322-222395
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_130 0.0 - - tip120, putative [Ricinus communis]
2 Hb_011819_020 0.0393450143 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
3 Hb_002411_110 0.0420732874 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
4 Hb_000317_100 0.0424299461 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
5 Hb_005215_010 0.0530052459 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
6 Hb_000003_100 0.0536226944 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
7 Hb_000261_480 0.0537087732 - - 26S proteasome regulatory subunit family protein [Populus trichocarpa]
8 Hb_001377_350 0.0558904534 - - PREDICTED: exportin-2 [Jatropha curcas]
9 Hb_002749_060 0.0574589242 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
10 Hb_000773_040 0.058507753 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
11 Hb_002071_070 0.0608789443 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
12 Hb_004586_220 0.0614271932 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
13 Hb_004030_080 0.0615512978 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
14 Hb_012286_040 0.0621801432 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
15 Hb_002989_020 0.0627856561 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
16 Hb_011231_020 0.0630428579 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
17 Hb_000537_050 0.0632663202 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
18 Hb_004208_050 0.0634314094 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
19 Hb_003040_050 0.0635335498 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
20 Hb_012632_010 0.0638531547 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_130 Hb_002890_130 Hb_011819_020 Hb_011819_020 Hb_002890_130--Hb_011819_020 Hb_002411_110 Hb_002411_110 Hb_002890_130--Hb_002411_110 Hb_000317_100 Hb_000317_100 Hb_002890_130--Hb_000317_100 Hb_005215_010 Hb_005215_010 Hb_002890_130--Hb_005215_010 Hb_000003_100 Hb_000003_100 Hb_002890_130--Hb_000003_100 Hb_000261_480 Hb_000261_480 Hb_002890_130--Hb_000261_480 Hb_011819_020--Hb_000261_480 Hb_011819_020--Hb_000317_100 Hb_002749_060 Hb_002749_060 Hb_011819_020--Hb_002749_060 Hb_003280_020 Hb_003280_020 Hb_011819_020--Hb_003280_020 Hb_011819_020--Hb_005215_010 Hb_001925_060 Hb_001925_060 Hb_002411_110--Hb_001925_060 Hb_008948_020 Hb_008948_020 Hb_002411_110--Hb_008948_020 Hb_002411_110--Hb_000317_100 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040 Hb_000317_100--Hb_005215_010 Hb_003040_050 Hb_003040_050 Hb_000317_100--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_000494_050 Hb_000494_050 Hb_005215_010--Hb_000494_050 Hb_005215_010--Hb_003040_050 Hb_012760_100 Hb_012760_100 Hb_005215_010--Hb_012760_100 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_012286_040 Hb_012286_040 Hb_000003_100--Hb_012286_040 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_004208_050 Hb_004208_050 Hb_000261_480--Hb_004208_050 Hb_004048_120 Hb_004048_120 Hb_000261_480--Hb_004048_120 Hb_000261_480--Hb_003280_020 Hb_001377_350 Hb_001377_350 Hb_000261_480--Hb_001377_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.8506 13.6322 10.8717 13.9301 10.1166 10.7148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.36476 7.65129 10.6773 15.2613 15.5304

CAGE analysis