Hb_001925_060

Information

Type -
Description -
Location Contig1925: 92934-101348
Sequence    

Annotation

kegg
ID rcu:RCOM_0642180
description hypothetical protein
nr
ID XP_012072543.1
description PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
swissprot
ID F4K1B1
description Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1
trembl
ID A0A067KP41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05341 PE=4 SV=1
Gene Ontology
ID GO:0006996
description rna polymerase ii subunit b1 ctd phosphatase rpap2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19175: 93073-95124 , PASA_asmbl_19176: 95155-95324 , PASA_asmbl_19178: 95417-101358 , PASA_asmbl_19179: 95997-98355 , PASA_asmbl_19181: 100597-100701
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001925_060 0.0 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
2 Hb_002411_110 0.0486791108 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
3 Hb_003040_050 0.0565103231 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
4 Hb_007413_010 0.0575347645 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
5 Hb_011174_020 0.0575762318 - - PREDICTED: uncharacterized protein LOC105632610 [Jatropha curcas]
6 Hb_000317_100 0.0611713742 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
7 Hb_000795_040 0.0630811266 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
8 Hb_001377_190 0.0633283562 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
9 Hb_008948_020 0.0646031332 - - hypothetical protein JCGZ_21216 [Jatropha curcas]
10 Hb_003734_010 0.066448464 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
11 Hb_002581_010 0.0668281069 - - PREDICTED: uncharacterized protein LOC105641469 isoform X2 [Jatropha curcas]
12 Hb_003117_030 0.0672939653 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
13 Hb_002890_130 0.0703326836 - - tip120, putative [Ricinus communis]
14 Hb_033312_130 0.0707626895 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
15 Hb_001157_160 0.0714523078 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 2 isoform X1 [Jatropha curcas]
16 Hb_002205_030 0.0720846345 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
17 Hb_002357_070 0.0721205392 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
18 Hb_002007_110 0.0723222499 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
19 Hb_073171_070 0.0735129679 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
20 Hb_188281_040 0.0735319853 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_001925_060 Hb_001925_060 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_007413_010 Hb_007413_010 Hb_001925_060--Hb_007413_010 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040 Hb_002890_130 Hb_002890_130 Hb_002411_110--Hb_002890_130 Hb_008948_020 Hb_008948_020 Hb_002411_110--Hb_008948_020 Hb_002411_110--Hb_000317_100 Hb_011819_020 Hb_011819_020 Hb_002411_110--Hb_011819_020 Hb_033312_040 Hb_033312_040 Hb_002411_110--Hb_033312_040 Hb_009288_020 Hb_009288_020 Hb_003040_050--Hb_009288_020 Hb_073171_070 Hb_073171_070 Hb_003040_050--Hb_073171_070 Hb_006663_060 Hb_006663_060 Hb_003040_050--Hb_006663_060 Hb_003040_050--Hb_000317_100 Hb_003040_050--Hb_011174_020 Hb_006913_020 Hb_006913_020 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_007413_010--Hb_001789_110 Hb_012244_020 Hb_012244_020 Hb_011174_020--Hb_012244_020 Hb_000568_050 Hb_000568_050 Hb_011174_020--Hb_000568_050 Hb_002805_210 Hb_002805_210 Hb_011174_020--Hb_002805_210 Hb_017469_110 Hb_017469_110 Hb_011174_020--Hb_017469_110 Hb_005215_010 Hb_005215_010 Hb_000317_100--Hb_005215_010 Hb_000317_100--Hb_002890_130 Hb_000317_100--Hb_011819_020 Hb_000773_040 Hb_000773_040 Hb_000317_100--Hb_000773_040 Hb_000085_210 Hb_000085_210 Hb_000795_040--Hb_000085_210 Hb_002581_010 Hb_002581_010 Hb_000795_040--Hb_002581_010 Hb_000795_040--Hb_011174_020 Hb_000795_040--Hb_017469_110 Hb_000879_040 Hb_000879_040 Hb_000795_040--Hb_000879_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.95995 12.4752 9.02727 8.74577 6.46702 9.43114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.85056 6.4834 6.29909 11.6227 13.9201

CAGE analysis