Hb_001377_190

Information

Type transcription factor
Description TF Family: PHD
Location Contig1377: 158762-167601
Sequence    

Annotation

kegg
ID rcu:RCOM_0718450
description trithorax, putative (EC:2.1.1.43)
nr
ID XP_012083218.1
description PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
swissprot
ID Q9M364
description Histone-lysine N-methyltransferase ATX3 OS=Arabidopsis thaliana GN=ATX3 PE=2 SV=2
trembl
ID A0A067JX80
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_14263 PE=4 SV=1
Gene Ontology
ID GO:0005515
description histone-lysine n-methyltransferase atx3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10397: 158809-164607 , PASA_asmbl_10398: 158809-163590 , PASA_asmbl_10399: 164943-167163 , PASA_asmbl_10400: 167338-167554
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_190 0.0 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
2 Hb_007413_010 0.0572953796 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
3 Hb_000189_600 0.0591500015 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
4 Hb_006913_020 0.0599515905 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
5 Hb_000363_310 0.0600939189 - - DNA topoisomerase type I, putative [Ricinus communis]
6 Hb_000749_010 0.0614648768 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
7 Hb_001925_060 0.0633283562 - - PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog [Jatropha curcas]
8 Hb_005730_040 0.0645732304 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
9 Hb_001789_110 0.0647629057 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_003040_050 0.0650432705 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
11 Hb_003517_040 0.0656405537 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
12 Hb_010068_080 0.065915888 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
13 Hb_000510_360 0.067650761 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase GCN5 [Jatropha curcas]
14 Hb_002849_130 0.0676651678 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
15 Hb_000795_040 0.0685247454 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
16 Hb_007765_100 0.0685615697 - - PREDICTED: helicase SKI2W [Jatropha curcas]
17 Hb_073171_070 0.068821872 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
18 Hb_001481_060 0.0700643194 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
19 Hb_000521_330 0.0703350416 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002205_030 0.070838436 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_190 Hb_001377_190 Hb_007413_010 Hb_007413_010 Hb_001377_190--Hb_007413_010 Hb_000189_600 Hb_000189_600 Hb_001377_190--Hb_000189_600 Hb_006913_020 Hb_006913_020 Hb_001377_190--Hb_006913_020 Hb_000363_310 Hb_000363_310 Hb_001377_190--Hb_000363_310 Hb_000749_010 Hb_000749_010 Hb_001377_190--Hb_000749_010 Hb_001925_060 Hb_001925_060 Hb_001377_190--Hb_001925_060 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_007413_010--Hb_001925_060 Hb_001789_110 Hb_001789_110 Hb_007413_010--Hb_001789_110 Hb_004333_040 Hb_004333_040 Hb_000189_600--Hb_004333_040 Hb_183433_010 Hb_183433_010 Hb_000189_600--Hb_183433_010 Hb_000617_230 Hb_000617_230 Hb_000189_600--Hb_000617_230 Hb_001430_080 Hb_001430_080 Hb_000189_600--Hb_001430_080 Hb_000521_330 Hb_000521_330 Hb_000189_600--Hb_000521_330 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_006913_020--Hb_008948_020 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_000347_430 Hb_000347_430 Hb_000363_310--Hb_000347_430 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000363_310--Hb_000749_010 Hb_002205_230 Hb_002205_230 Hb_000749_010--Hb_002205_230 Hb_000749_010--Hb_021374_030 Hb_000599_270 Hb_000599_270 Hb_000749_010--Hb_000599_270 Hb_000749_010--Hb_000111_170 Hb_002411_110 Hb_002411_110 Hb_001925_060--Hb_002411_110 Hb_003040_050 Hb_003040_050 Hb_001925_060--Hb_003040_050 Hb_011174_020 Hb_011174_020 Hb_001925_060--Hb_011174_020 Hb_000317_100 Hb_000317_100 Hb_001925_060--Hb_000317_100 Hb_000795_040 Hb_000795_040 Hb_001925_060--Hb_000795_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.46132 10.0505 9.09269 8.12162 5.887 6.16507
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.58386 6.54615 5.84276 8.03967 11.4609

CAGE analysis