Hb_002205_230

Information

Type -
Description -
Location Contig2205: 158421-163805
Sequence    

Annotation

kegg
ID rcu:RCOM_0689940
description glycerol-3-phosphate dehydrogenase, putative (EC:1.1.1.94)
nr
ID XP_002520875.1
description glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q949Q0
description Glycerol-3-phosphate dehydrogenase [NAD(+)] 2, chloroplastic OS=Arabidopsis thaliana GN=GLY1 PE=1 SV=1
trembl
ID B9S4F6
description Glycerol-3-phosphate dehydrogenase [NAD(+)] OS=Ricinus communis GN=RCOM_0689940 PE=3 SV=1
Gene Ontology
ID GO:0009331
description glycerol-3-phosphate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22733: 156625-157657 , PASA_asmbl_22734: 159734-160164 , PASA_asmbl_22735: 163278-163569
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002205_230 0.0 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_000749_010 0.0578072034 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
3 Hb_000059_380 0.0664286822 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_000599_270 0.0688196503 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
5 Hb_001589_010 0.0751375491 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
6 Hb_021374_030 0.0762791012 - - hypothetical protein RCOM_0351490 [Ricinus communis]
7 Hb_000797_040 0.0769761887 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
8 Hb_002758_010 0.0771490792 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
9 Hb_000317_050 0.0783362315 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
10 Hb_000230_400 0.0807228371 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001377_190 0.0830919645 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
12 Hb_004450_040 0.0840768295 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
13 Hb_011930_020 0.0874426079 - - PREDICTED: uncharacterized protein LOC105649787 isoform X1 [Jatropha curcas]
14 Hb_001789_110 0.0876153024 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_006913_020 0.088495086 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
16 Hb_004310_140 0.0898623419 - - PREDICTED: glycine--tRNA ligase 2, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
17 Hb_004837_180 0.0911596529 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_007590_020 0.0914898209 - - PREDICTED: protein DAMAGED DNA-BINDING 2 [Jatropha curcas]
19 Hb_007413_010 0.0915139175 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
20 Hb_005116_050 0.091870367 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002205_230 Hb_002205_230 Hb_000749_010 Hb_000749_010 Hb_002205_230--Hb_000749_010 Hb_000059_380 Hb_000059_380 Hb_002205_230--Hb_000059_380 Hb_000599_270 Hb_000599_270 Hb_002205_230--Hb_000599_270 Hb_001589_010 Hb_001589_010 Hb_002205_230--Hb_001589_010 Hb_021374_030 Hb_021374_030 Hb_002205_230--Hb_021374_030 Hb_000797_040 Hb_000797_040 Hb_002205_230--Hb_000797_040 Hb_001377_190 Hb_001377_190 Hb_000749_010--Hb_001377_190 Hb_000363_310 Hb_000363_310 Hb_000749_010--Hb_000363_310 Hb_000749_010--Hb_021374_030 Hb_000749_010--Hb_000599_270 Hb_000111_170 Hb_000111_170 Hb_000749_010--Hb_000111_170 Hb_005588_080 Hb_005588_080 Hb_000059_380--Hb_005588_080 Hb_000230_400 Hb_000230_400 Hb_000059_380--Hb_000230_400 Hb_010068_080 Hb_010068_080 Hb_000059_380--Hb_010068_080 Hb_007007_120 Hb_007007_120 Hb_000059_380--Hb_007007_120 Hb_000699_030 Hb_000699_030 Hb_000059_380--Hb_000699_030 Hb_000599_270--Hb_021374_030 Hb_002581_010 Hb_002581_010 Hb_000599_270--Hb_002581_010 Hb_006913_020 Hb_006913_020 Hb_000599_270--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_000599_270--Hb_007413_010 Hb_017469_110 Hb_017469_110 Hb_000599_270--Hb_017469_110 Hb_000720_050 Hb_000720_050 Hb_001589_010--Hb_000720_050 Hb_001936_090 Hb_001936_090 Hb_001589_010--Hb_001936_090 Hb_005116_050 Hb_005116_050 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040 Hb_021374_030--Hb_006913_020 Hb_021374_030--Hb_007413_010 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_000665_120 Hb_000665_120 Hb_000797_040--Hb_000665_120 Hb_002205_030 Hb_002205_030 Hb_000797_040--Hb_002205_030 Hb_028960_020 Hb_028960_020 Hb_000797_040--Hb_028960_020 Hb_004310_140 Hb_004310_140 Hb_000797_040--Hb_004310_140 Hb_002218_090 Hb_002218_090 Hb_000797_040--Hb_002218_090 Hb_007426_110 Hb_007426_110 Hb_000797_040--Hb_007426_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.07269 2.92124 2.94059 1.87733 1.62868 2.48374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74218 3.09962 1.72324 2.40547 4.35616

CAGE analysis