Hb_010068_080

Information

Type -
Description -
Location Contig10068: 51213-55097
Sequence    

Annotation

kegg
ID pmum:103326457
description uncharacterized protein C2orf16-like
nr
ID XP_012070828.1
description PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
swissprot
ID Q84TH4
description Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1
trembl
ID A0A067KSD3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00888 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine repetitive matrix protein 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00442: 51240-55043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010068_080 0.0 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
2 Hb_003428_010 0.0558585506 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
3 Hb_003849_110 0.06017059 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
4 Hb_001304_110 0.0607305491 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
5 Hb_000640_040 0.0614863927 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
6 Hb_002542_110 0.0629749453 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
7 Hb_000029_060 0.0649341016 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
8 Hb_002830_010 0.0652890878 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
9 Hb_001377_190 0.065915888 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
10 Hb_002234_090 0.0695542651 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
11 Hb_001699_220 0.0710218866 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
12 Hb_001124_130 0.0727663618 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_001716_040 0.0731126585 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
14 Hb_004916_010 0.0758527412 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
15 Hb_000363_310 0.076662318 - - DNA topoisomerase type I, putative [Ricinus communis]
16 Hb_006913_020 0.0768665718 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
17 Hb_005582_040 0.0769880862 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
18 Hb_000059_380 0.0794796352 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
19 Hb_000069_310 0.0795861146 - - ubiquitin ligase [Cucumis melo subsp. melo]
20 Hb_001635_120 0.0796629112 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]

Gene co-expression network

sample Hb_010068_080 Hb_010068_080 Hb_003428_010 Hb_003428_010 Hb_010068_080--Hb_003428_010 Hb_003849_110 Hb_003849_110 Hb_010068_080--Hb_003849_110 Hb_001304_110 Hb_001304_110 Hb_010068_080--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_010068_080--Hb_000640_040 Hb_002542_110 Hb_002542_110 Hb_010068_080--Hb_002542_110 Hb_000029_060 Hb_000029_060 Hb_010068_080--Hb_000029_060 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_003464_090 Hb_003464_090 Hb_003849_110--Hb_003464_090 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_005582_040 Hb_005582_040 Hb_001304_110--Hb_005582_040 Hb_005686_090 Hb_005686_090 Hb_001304_110--Hb_005686_090 Hb_001999_290 Hb_001999_290 Hb_001304_110--Hb_001999_290 Hb_011386_010 Hb_011386_010 Hb_001304_110--Hb_011386_010 Hb_005054_110 Hb_005054_110 Hb_001304_110--Hb_005054_110 Hb_001716_040 Hb_001716_040 Hb_000640_040--Hb_001716_040 Hb_000640_040--Hb_002542_110 Hb_000640_040--Hb_005582_040 Hb_001157_240 Hb_001157_240 Hb_000640_040--Hb_001157_240 Hb_000640_040--Hb_001304_110 Hb_002542_110--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_002542_110--Hb_002686_090 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_001716_020 Hb_001716_020 Hb_000029_060--Hb_001716_020 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05417 16.7805 15.0148 11.8622 8.65079 9.75163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0374 13.0155 14.4025 12.3154 16.7419

CAGE analysis