Hb_004052_080

Information

Type -
Description -
Location Contig4052: 87385-93882
Sequence    

Annotation

kegg
ID rcu:RCOM_1469440
description hypothetical protein
nr
ID XP_002514639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O94336
description Uncharacterized FCP1 homology domain-containing protein C1271.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1271.03c PE=3 SV=1
trembl
ID B9RLM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40190: 87322-93813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007007_120 0.0394214899 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
3 Hb_000339_040 0.0448139514 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_003513_010 0.0461080948 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
5 Hb_002876_230 0.0475576093 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
6 Hb_003428_010 0.0477353555 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
7 Hb_003861_060 0.053352333 - - PREDICTED: treacle protein [Jatropha curcas]
8 Hb_001456_060 0.053894437 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
9 Hb_002013_020 0.0548498804 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
10 Hb_009911_030 0.057289458 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
11 Hb_014834_150 0.0581252043 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001226_150 0.0695217736 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
13 Hb_170416_010 0.0696126052 - - PREDICTED: cold-regulated 413 plasma membrane protein 2-like [Jatropha curcas]
14 Hb_000869_020 0.0699307147 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
15 Hb_013358_040 0.0719059304 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
16 Hb_000789_320 0.0728521323 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
17 Hb_010931_070 0.0731947183 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 2 isoform X1 [Jatropha curcas]
18 Hb_001761_120 0.0733166536 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
19 Hb_004970_190 0.0734116389 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_005867_070 0.0739957573 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004052_080 Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_004052_080--Hb_007007_120 Hb_000339_040 Hb_000339_040 Hb_004052_080--Hb_000339_040 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_002876_230 Hb_002876_230 Hb_004052_080--Hb_002876_230 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_007007_120--Hb_003428_010 Hb_007007_120--Hb_002876_230 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_003513_010 Hb_007007_120--Hb_000339_040 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_014834_150 Hb_014834_150 Hb_003513_010--Hb_014834_150 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003513_010--Hb_003861_060 Hb_002876_230--Hb_001456_060 Hb_002876_230--Hb_009911_030 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110 Hb_003849_110 Hb_003849_110 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003428_010--Hb_003861_060 Hb_003428_010--Hb_014834_150 Hb_003861_060--Hb_014834_150 Hb_164390_010 Hb_164390_010 Hb_003861_060--Hb_164390_010 Hb_000392_420 Hb_000392_420 Hb_003861_060--Hb_000392_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.93189 5.61573 8.89621 5.52961 4.93299 6.03816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66569 6.92006 6.11191 4.88222 6.57191

CAGE analysis