Hb_000339_040

Information

Type -
Description -
Location Contig339: 109788-115774
Sequence    

Annotation

kegg
ID rcu:RCOM_1250080
description protein with unknown function
nr
ID XP_012091797.1
description PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
swissprot
ID Q9UHR5
description SAP30-binding protein OS=Homo sapiens GN=SAP30BP PE=1 SV=1
trembl
ID A0A067JBG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21583 PE=4 SV=1
Gene Ontology
ID GO:0006355
description sap30-binding protein isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35425: 109910-115739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000339_040 0.0 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
2 Hb_004052_080 0.0448139514 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001456_060 0.048899009 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
4 Hb_002876_230 0.052212756 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
5 Hb_009911_030 0.0553606753 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
6 Hb_004837_180 0.0555548767 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
7 Hb_005867_070 0.0559340653 - - DNA binding protein, putative [Ricinus communis]
8 Hb_003428_010 0.056862657 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
9 Hb_001226_150 0.0579252749 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
10 Hb_000789_320 0.058892091 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_007007_120 0.0593943786 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
12 Hb_004994_010 0.0602894339 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
13 Hb_003861_060 0.0609926887 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_003861_050 0.0619463351 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
15 Hb_014834_150 0.0622320307 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_171900_090 0.0641640209 - - conserved hypothetical protein [Ricinus communis]
17 Hb_183433_010 0.0643155049 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
18 Hb_000359_040 0.0648793934 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001153_210 0.0659471626 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
20 Hb_000189_600 0.0667392995 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000339_040 Hb_000339_040 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_007007_120 Hb_007007_120 Hb_004052_080--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_004052_080--Hb_002876_230 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_001456_060--Hb_009911_030 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_001456_060--Hb_002876_230 Hb_001456_060--Hb_005867_070 Hb_002876_230--Hb_007007_120 Hb_002876_230--Hb_009911_030 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110 Hb_009911_030--Hb_003428_010 Hb_009911_030--Hb_004052_080 Hb_000172_430 Hb_000172_430 Hb_009911_030--Hb_000172_430 Hb_004837_180--Hb_005867_070 Hb_007590_020 Hb_007590_020 Hb_004837_180--Hb_007590_020 Hb_003929_280 Hb_003929_280 Hb_004837_180--Hb_003929_280 Hb_001225_040 Hb_001225_040 Hb_004837_180--Hb_001225_040 Hb_002217_110 Hb_002217_110 Hb_004837_180--Hb_002217_110 Hb_004236_050 Hb_004236_050 Hb_004837_180--Hb_004236_050 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_005867_070--Hb_007590_020 Hb_000165_040 Hb_000165_040 Hb_005867_070--Hb_000165_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3231 15.9715 21.3112 13.2542 11.5719 14.0683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9836 14.5966 11.5236 13.3551 14.3075

CAGE analysis