Hb_002876_230

Information

Type -
Description -
Location Contig2876: 212773-217445
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11880g
description hypothetical protein
nr
ID XP_012072026.1
description PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
swissprot
ID O67550
description 5'-3' exonuclease OS=Aquifex aeolicus (strain VF5) GN=aq_1628 PE=3 SV=1
trembl
ID A0A067L1F9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05385 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30048: 213003-213886 , PASA_asmbl_30049: 215032-217165 , PASA_asmbl_30051: 217192-217407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002876_230 0.0 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
2 Hb_004052_080 0.0475576093 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000339_040 0.052212756 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_001456_060 0.0539632309 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
5 Hb_007007_120 0.0585803299 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
6 Hb_009911_030 0.0606667853 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
7 Hb_000331_110 0.064965546 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
8 Hb_002013_020 0.0651530545 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
9 Hb_001226_150 0.0660973933 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
10 Hb_005867_070 0.0676095124 - - DNA binding protein, putative [Ricinus communis]
11 Hb_004994_010 0.0688094862 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
12 Hb_000205_190 0.0701625031 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
13 Hb_003513_010 0.07109333 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
14 Hb_012384_030 0.0718519102 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
15 Hb_003861_050 0.0743632635 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
16 Hb_004837_180 0.0753206901 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
17 Hb_003428_010 0.0761721059 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
18 Hb_001153_210 0.0767225409 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
19 Hb_000390_230 0.0770834285 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
20 Hb_000935_010 0.0770905056 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]

Gene co-expression network

sample Hb_002876_230 Hb_002876_230 Hb_004052_080 Hb_004052_080 Hb_002876_230--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_002876_230--Hb_000339_040 Hb_001456_060 Hb_001456_060 Hb_002876_230--Hb_001456_060 Hb_007007_120 Hb_007007_120 Hb_002876_230--Hb_007007_120 Hb_009911_030 Hb_009911_030 Hb_002876_230--Hb_009911_030 Hb_000331_110 Hb_000331_110 Hb_002876_230--Hb_000331_110 Hb_004052_080--Hb_007007_120 Hb_004052_080--Hb_000339_040 Hb_003513_010 Hb_003513_010 Hb_004052_080--Hb_003513_010 Hb_003428_010 Hb_003428_010 Hb_004052_080--Hb_003428_010 Hb_003861_060 Hb_003861_060 Hb_004052_080--Hb_003861_060 Hb_000339_040--Hb_001456_060 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_001456_060--Hb_009911_030 Hb_004994_010 Hb_004994_010 Hb_001456_060--Hb_004994_010 Hb_001456_060--Hb_004052_080 Hb_001456_060--Hb_005867_070 Hb_007007_120--Hb_003428_010 Hb_001226_150 Hb_001226_150 Hb_007007_120--Hb_001226_150 Hb_007007_120--Hb_003513_010 Hb_007007_120--Hb_000339_040 Hb_009911_030--Hb_003428_010 Hb_009911_030--Hb_004052_080 Hb_000172_430 Hb_000172_430 Hb_009911_030--Hb_000172_430 Hb_079526_030 Hb_079526_030 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_003878_110 Hb_003878_110 Hb_000331_110--Hb_003878_110 Hb_001089_110 Hb_001089_110 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25219 2.14909 3.47562 1.58696 1.99462 2.67438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87975 2.43589 2.174 2.15003 2.23885

CAGE analysis