Hb_003878_110

Information

Type -
Description -
Location Contig3878: 98559-100125
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11090g
description POPTRDRAFT_568802; hypothetical protein
nr
ID XP_012075815.1
description PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KR90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10565 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003878_110 0.0 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
2 Hb_002684_040 0.060144028 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
3 Hb_001433_070 0.0616154362 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
4 Hb_000331_110 0.0632787288 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
5 Hb_079526_030 0.0632805904 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
6 Hb_002374_260 0.0641994223 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
7 Hb_001143_180 0.0643832021 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
8 Hb_183612_040 0.0654276316 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
9 Hb_022256_060 0.068562853 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
10 Hb_000152_260 0.07098717 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
11 Hb_000005_220 0.0712932034 - - DNA ligase 1, partial [Glycine soja]
12 Hb_003638_090 0.0729638093 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
13 Hb_000035_110 0.0746645263 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
14 Hb_004097_070 0.0755171954 - - PREDICTED: F-box protein At2g26160-like [Jatropha curcas]
15 Hb_001635_040 0.0762373792 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
16 Hb_005289_040 0.0776447281 - - poly(A) polymerase, putative [Ricinus communis]
17 Hb_000134_270 0.0777256593 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
18 Hb_162286_010 0.0778302592 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
19 Hb_002272_130 0.0784686676 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
20 Hb_001821_160 0.0792996725 - - serine/arginine rich splicing factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003878_110 Hb_003878_110 Hb_002684_040 Hb_002684_040 Hb_003878_110--Hb_002684_040 Hb_001433_070 Hb_001433_070 Hb_003878_110--Hb_001433_070 Hb_000331_110 Hb_000331_110 Hb_003878_110--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_003878_110--Hb_079526_030 Hb_002374_260 Hb_002374_260 Hb_003878_110--Hb_002374_260 Hb_001143_180 Hb_001143_180 Hb_003878_110--Hb_001143_180 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_000853_230 Hb_000853_230 Hb_002684_040--Hb_000853_230 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_002175_030 Hb_002175_030 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_001433_070--Hb_183612_040 Hb_000331_110--Hb_079526_030 Hb_000260_680 Hb_000260_680 Hb_000331_110--Hb_000260_680 Hb_000331_110--Hb_001089_110 Hb_001821_160 Hb_001821_160 Hb_000331_110--Hb_001821_160 Hb_002876_230 Hb_002876_230 Hb_000331_110--Hb_002876_230 Hb_079526_030--Hb_001089_110 Hb_079526_030--Hb_001821_160 Hb_000160_350 Hb_000160_350 Hb_079526_030--Hb_000160_350 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_000152_260 Hb_000152_260 Hb_002374_260--Hb_000152_260 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110 Hb_005332_020 Hb_005332_020 Hb_002374_260--Hb_005332_020 Hb_000291_060 Hb_000291_060 Hb_001143_180--Hb_000291_060 Hb_033834_030 Hb_033834_030 Hb_001143_180--Hb_033834_030 Hb_006816_050 Hb_006816_050 Hb_001143_180--Hb_006816_050 Hb_001143_180--Hb_183612_040 Hb_005337_090 Hb_005337_090 Hb_001143_180--Hb_005337_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.78187 5.2773 7.95699 4.20886 7.11765 8.65632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88213 4.39891 3.00914 4.84493 5.21236

CAGE analysis