Hb_002304_060

Information

Type -
Description -
Location Contig2304: 33329-38830
Sequence    

Annotation

kegg
ID rcu:RCOM_0342850
description glucosidase II beta subunit, putative
nr
ID XP_012091718.1
description PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
swissprot
ID Q9FM96
description Glucosidase 2 subunit beta OS=Arabidopsis thaliana GN=PSL4 PE=2 SV=1
trembl
ID A0A067JNG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24210: 33277-37971
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_060 0.0 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
2 Hb_002374_260 0.0701465233 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
3 Hb_000917_320 0.0711249552 - - PREDICTED: uncharacterized protein LOC105641975 isoform X1 [Jatropha curcas]
4 Hb_001377_110 0.0822768466 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
5 Hb_004800_180 0.0856431224 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
6 Hb_000224_150 0.0877375329 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial [Jatropha curcas]
7 Hb_000085_140 0.0879338927 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105633025 [Jatropha curcas]
8 Hb_000134_270 0.089803917 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
9 Hb_000563_420 0.0908585765 - - PREDICTED: acyl-CoA dehydrogenase family member 10 [Jatropha curcas]
10 Hb_031284_010 0.0909414305 - - PREDICTED: uncharacterized protein LOC105633543 [Jatropha curcas]
11 Hb_002311_310 0.0927219174 - - PREDICTED: uncharacterized protein LOC100246622 [Vitis vinifera]
12 Hb_001089_070 0.0932956464 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
13 Hb_162286_010 0.0936062816 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
14 Hb_000864_030 0.0949220449 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
15 Hb_003878_110 0.0952416685 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
16 Hb_021943_080 0.0953069277 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
17 Hb_001021_220 0.0967806943 - - PREDICTED: spermatogenesis-associated protein 20 isoform X1 [Jatropha curcas]
18 Hb_160459_040 0.0968121618 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
19 Hb_000523_080 0.0975750376 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
20 Hb_009771_110 0.0976830847 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_002304_060 Hb_002304_060 Hb_002374_260 Hb_002374_260 Hb_002304_060--Hb_002374_260 Hb_000917_320 Hb_000917_320 Hb_002304_060--Hb_000917_320 Hb_001377_110 Hb_001377_110 Hb_002304_060--Hb_001377_110 Hb_004800_180 Hb_004800_180 Hb_002304_060--Hb_004800_180 Hb_000224_150 Hb_000224_150 Hb_002304_060--Hb_000224_150 Hb_000085_140 Hb_000085_140 Hb_002304_060--Hb_000085_140 Hb_003878_110 Hb_003878_110 Hb_002374_260--Hb_003878_110 Hb_003638_090 Hb_003638_090 Hb_002374_260--Hb_003638_090 Hb_000152_260 Hb_000152_260 Hb_002374_260--Hb_000152_260 Hb_002374_260--Hb_001377_110 Hb_005332_020 Hb_005332_020 Hb_002374_260--Hb_005332_020 Hb_000134_270 Hb_000134_270 Hb_000917_320--Hb_000134_270 Hb_000864_030 Hb_000864_030 Hb_000917_320--Hb_000864_030 Hb_000044_040 Hb_000044_040 Hb_000917_320--Hb_000044_040 Hb_000318_120 Hb_000318_120 Hb_000917_320--Hb_000318_120 Hb_000917_320--Hb_004800_180 Hb_098209_010 Hb_098209_010 Hb_001377_110--Hb_098209_010 Hb_009771_110 Hb_009771_110 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_007929_080 Hb_007929_080 Hb_001377_110--Hb_007929_080 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_001021_220 Hb_001021_220 Hb_001377_110--Hb_001021_220 Hb_000103_570 Hb_000103_570 Hb_004800_180--Hb_000103_570 Hb_000181_100 Hb_000181_100 Hb_004800_180--Hb_000181_100 Hb_004800_180--Hb_000864_030 Hb_000563_420 Hb_000563_420 Hb_004800_180--Hb_000563_420 Hb_000665_120 Hb_000665_120 Hb_004800_180--Hb_000665_120 Hb_000679_020 Hb_000679_020 Hb_004800_180--Hb_000679_020 Hb_138435_010 Hb_138435_010 Hb_000224_150--Hb_138435_010 Hb_000224_150--Hb_000457_230 Hb_032202_080 Hb_032202_080 Hb_000224_150--Hb_032202_080 Hb_000371_010 Hb_000371_010 Hb_000224_150--Hb_000371_010 Hb_000224_150--Hb_003186_020 Hb_000640_160 Hb_000640_160 Hb_000224_150--Hb_000640_160 Hb_002615_120 Hb_002615_120 Hb_000085_140--Hb_002615_120 Hb_000085_140--Hb_032202_080 Hb_065525_130 Hb_065525_130 Hb_000085_140--Hb_065525_130 Hb_000085_140--Hb_001377_110 Hb_005895_010 Hb_005895_010 Hb_000085_140--Hb_005895_010 Hb_000085_140--Hb_098209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8762 7.04162 14.2399 5.57184 10.0469 12.2573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.93126 4.08065 3.71779 8.97268 12.3072

CAGE analysis