Hb_007929_080

Information

Type -
Description -
Location Contig7929: 75805-98729
Sequence    

Annotation

kegg
ID rcu:RCOM_1349670
description hypothetical protein
nr
ID XP_012073998.1
description PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
swissprot
ID A4IG72
description Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1
trembl
ID A0A067KJZ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08582 PE=4 SV=1
Gene Ontology
ID GO:0005622
description transforming growth factor-beta receptor-associated protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58432: 78899-89642 , PASA_asmbl_58433: 78899-88663 , PASA_asmbl_58434: 87735-87845 , PASA_asmbl_58435: 89796-91141 , PASA_asmbl_58436: 97847-98310 , PASA_asmbl_58437: 98588-115208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007929_080 0.0 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
2 Hb_002571_030 0.0523524771 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
3 Hb_009771_110 0.0544382314 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
4 Hb_000523_080 0.0578480331 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
5 Hb_001405_190 0.06026951 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial [Jatropha curcas]
6 Hb_001377_110 0.0649091769 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
7 Hb_006618_090 0.0676909571 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
8 Hb_143766_110 0.0704396119 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
9 Hb_000230_090 0.070509246 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
10 Hb_005053_010 0.0727713736 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
11 Hb_002701_150 0.0729081046 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
12 Hb_001021_200 0.0750702006 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
13 Hb_000922_020 0.0752623344 - - protein binding protein, putative [Ricinus communis]
14 Hb_105641_010 0.0757977656 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
15 Hb_003638_090 0.0768115154 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
16 Hb_000236_470 0.0777497546 - - PREDICTED: pentatricopeptide repeat-containing protein At5g55840 [Jatropha curcas]
17 Hb_000679_340 0.0777834471 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
18 Hb_000960_050 0.078357757 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_000836_410 0.078398636 - - sec10, putative [Ricinus communis]
20 Hb_000577_030 0.0784156072 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_007929_080 Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_007929_080--Hb_002571_030 Hb_009771_110 Hb_009771_110 Hb_007929_080--Hb_009771_110 Hb_000523_080 Hb_000523_080 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_006618_090 Hb_006618_090 Hb_007929_080--Hb_006618_090 Hb_007818_040 Hb_007818_040 Hb_002571_030--Hb_007818_040 Hb_002571_030--Hb_009771_110 Hb_007305_020 Hb_007305_020 Hb_002571_030--Hb_007305_020 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_009771_110--Hb_000523_080 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_003943_020 Hb_003943_020 Hb_000523_080--Hb_003943_020 Hb_001723_140 Hb_001723_140 Hb_000523_080--Hb_001723_140 Hb_013358_070 Hb_013358_070 Hb_000523_080--Hb_013358_070 Hb_002615_120 Hb_002615_120 Hb_001405_190--Hb_002615_120 Hb_143766_110 Hb_143766_110 Hb_001405_190--Hb_143766_110 Hb_004631_190 Hb_004631_190 Hb_001405_190--Hb_004631_190 Hb_000922_020 Hb_000922_020 Hb_001405_190--Hb_000922_020 Hb_010362_030 Hb_010362_030 Hb_001405_190--Hb_010362_030 Hb_098209_010 Hb_098209_010 Hb_001377_110--Hb_098209_010 Hb_001377_110--Hb_009771_110 Hb_000457_230 Hb_000457_230 Hb_001377_110--Hb_000457_230 Hb_003186_020 Hb_003186_020 Hb_001377_110--Hb_003186_020 Hb_001021_220 Hb_001021_220 Hb_001377_110--Hb_001021_220 Hb_006618_090--Hb_005053_010 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22857 6.46415 7.55204 3.4971 7.58208 6.29873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31177 2.31027 3.05407 4.84658 5.24078

CAGE analysis