Hb_007818_040

Information

Type -
Description -
Location Contig7818: 52554-54955
Sequence    

Annotation

kegg
ID rcu:RCOM_1004240
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012084226.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
swissprot
ID Q8GUG7
description DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2
trembl
ID A0A067JVV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19102 PE=4 SV=1
Gene Ontology
ID GO:0009507
description dead-box atp-dependent rna helicase 50

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58003: 52962-54905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007818_040 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
2 Hb_002571_030 0.0503739434 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
3 Hb_007283_030 0.0610188736 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
4 Hb_007576_230 0.0632947005 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
5 Hb_001959_270 0.0686983491 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_179154_020 0.0729637524 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
7 Hb_000377_050 0.0731216454 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
8 Hb_009449_090 0.0779526785 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
9 Hb_155159_010 0.0821873119 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
10 Hb_007305_020 0.0851438713 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
11 Hb_005214_150 0.0853107664 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
12 Hb_000086_050 0.0870163484 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
13 Hb_002784_010 0.0876680947 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
14 Hb_000205_260 0.0883850762 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
15 Hb_003638_010 0.0897811913 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
16 Hb_001534_210 0.0902180643 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
17 Hb_009771_110 0.0904194773 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
18 Hb_001231_090 0.0905914736 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_000327_080 0.0911110543 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
20 Hb_005523_020 0.0919864665 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_007818_040 Hb_007818_040 Hb_002571_030 Hb_002571_030 Hb_007818_040--Hb_002571_030 Hb_007283_030 Hb_007283_030 Hb_007818_040--Hb_007283_030 Hb_007576_230 Hb_007576_230 Hb_007818_040--Hb_007576_230 Hb_001959_270 Hb_001959_270 Hb_007818_040--Hb_001959_270 Hb_179154_020 Hb_179154_020 Hb_007818_040--Hb_179154_020 Hb_000377_050 Hb_000377_050 Hb_007818_040--Hb_000377_050 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_007305_020 Hb_007305_020 Hb_002571_030--Hb_007305_020 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_155159_010 Hb_155159_010 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007283_030--Hb_007576_230 Hb_007283_030--Hb_000377_050 Hb_007576_220 Hb_007576_220 Hb_007576_230--Hb_007576_220 Hb_007576_230--Hb_000086_050 Hb_009449_090 Hb_009449_090 Hb_007576_230--Hb_009449_090 Hb_000300_250 Hb_000300_250 Hb_007576_230--Hb_000300_250 Hb_006573_170 Hb_006573_170 Hb_001959_270--Hb_006573_170 Hb_001959_270--Hb_179154_020 Hb_001492_040 Hb_001492_040 Hb_001959_270--Hb_001492_040 Hb_005214_150 Hb_005214_150 Hb_001959_270--Hb_005214_150 Hb_001959_270--Hb_000377_050 Hb_179154_020--Hb_000377_050 Hb_179154_020--Hb_007305_020 Hb_179154_020--Hb_007576_230 Hb_179154_020--Hb_002571_030 Hb_009476_090 Hb_009476_090 Hb_000377_050--Hb_009476_090 Hb_005832_010 Hb_005832_010 Hb_000377_050--Hb_005832_010 Hb_000703_130 Hb_000703_130 Hb_000377_050--Hb_000703_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1549 23.9709 18.8814 5.96675 15.4471 16.7793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89901 4.90648 5.18492 13.1986 16.8186

CAGE analysis