Hb_005214_150

Information

Type -
Description -
Location Contig5214: 116813-124318
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08340g
description POPTRDRAFT_649770; hypothetical protein
nr
ID XP_012074572.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
swissprot
ID O60094
description DNA polymerase V OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol5 PE=1 SV=2
trembl
ID A0A067KVQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09921 PE=4 SV=1
Gene Ontology
ID GO:0005829
description myb-binding protein 1a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46792: 116868-118245 , PASA_asmbl_46793: 118410-119932 , PASA_asmbl_46794: 120050-122819 , PASA_asmbl_46795: 122950-124192
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005214_150 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
2 Hb_002784_010 0.0639990417 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
3 Hb_011671_230 0.0696938944 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001959_270 0.071106571 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
5 Hb_000327_080 0.0718159396 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
6 Hb_000703_130 0.0733215061 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
7 Hb_155159_010 0.0740816722 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
8 Hb_000176_130 0.0756243151 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
9 Hb_009476_090 0.0784296765 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
10 Hb_003124_160 0.0799546588 - - dynamin, putative [Ricinus communis]
11 Hb_000377_050 0.0802806434 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
12 Hb_000949_010 0.0825169721 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
13 Hb_006573_170 0.0848948568 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007818_040 0.0853107664 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
15 Hb_006787_060 0.0854124835 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
16 Hb_002571_030 0.0854127029 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
17 Hb_007283_030 0.0868776471 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
18 Hb_000265_090 0.0886708727 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
19 Hb_003739_030 0.0897808314 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
20 Hb_001492_040 0.0902647764 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005214_150 Hb_005214_150 Hb_002784_010 Hb_002784_010 Hb_005214_150--Hb_002784_010 Hb_011671_230 Hb_011671_230 Hb_005214_150--Hb_011671_230 Hb_001959_270 Hb_001959_270 Hb_005214_150--Hb_001959_270 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_011671_230--Hb_002784_010 Hb_000574_510 Hb_000574_510 Hb_011671_230--Hb_000574_510 Hb_006573_170 Hb_006573_170 Hb_001959_270--Hb_006573_170 Hb_179154_020 Hb_179154_020 Hb_001959_270--Hb_179154_020 Hb_001492_040 Hb_001492_040 Hb_001959_270--Hb_001492_040 Hb_007818_040 Hb_007818_040 Hb_001959_270--Hb_007818_040 Hb_000377_050 Hb_000377_050 Hb_001959_270--Hb_000377_050 Hb_009449_090 Hb_009449_090 Hb_000327_080--Hb_009449_090 Hb_000327_080--Hb_007818_040 Hb_000327_080--Hb_011671_230 Hb_002571_030 Hb_002571_030 Hb_000327_080--Hb_002571_030 Hb_007576_220 Hb_007576_220 Hb_000327_080--Hb_007576_220 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8257 24.9342 11.2124 8.3039 16.8773 17.0367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.18647 4.15719 5.09435 14.5182 15.9706

CAGE analysis