Hb_000786_040

Information

Type transcription factor
Description TF Family: C3H
Location Contig786: 68621-81960
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14320g
description POPTRDRAFT_657068; zinc finger family protein
nr
ID XP_012089583.1
description PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
swissprot
ID Q9ZUM0
description Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1
trembl
ID A0A067JSN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01683 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58105: 68753-72939 , PASA_asmbl_58106: 78351-81969 , PASA_asmbl_58107: 72191-72543 , PASA_asmbl_58108: 71784-71906 , PASA_asmbl_58109: 70651-70817 , PASA_asmbl_58110: 68753-79785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000786_040 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
2 Hb_002784_010 0.0702029966 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
3 Hb_000230_090 0.0710117362 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
4 Hb_005104_010 0.0734881552 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
5 Hb_008253_030 0.0750134794 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
6 Hb_001767_140 0.0751350456 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
7 Hb_000345_150 0.0751527072 - - PREDICTED: uncharacterized protein LOC105647517 isoform X1 [Jatropha curcas]
8 Hb_000027_050 0.0763250113 - - PREDICTED: uncharacterized protein LOC105636933 isoform X1 [Jatropha curcas]
9 Hb_001268_280 0.0763818494 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004629_010 0.0783190294 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
11 Hb_000914_120 0.0793680123 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
12 Hb_001147_110 0.0798576814 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
13 Hb_001143_250 0.0809800387 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
14 Hb_001493_040 0.0825559716 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
15 Hb_000418_140 0.0827464601 - - PREDICTED: DNA damage-binding protein 1a [Jatropha curcas]
16 Hb_000264_030 0.0827646345 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
17 Hb_000103_100 0.083111219 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
18 Hb_003633_070 0.0842807954 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
19 Hb_007426_130 0.0844841109 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
20 Hb_000046_070 0.0853730396 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000786_040 Hb_000786_040 Hb_002784_010 Hb_002784_010 Hb_000786_040--Hb_002784_010 Hb_000230_090 Hb_000230_090 Hb_000786_040--Hb_000230_090 Hb_005104_010 Hb_005104_010 Hb_000786_040--Hb_005104_010 Hb_008253_030 Hb_008253_030 Hb_000786_040--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_000786_040--Hb_001767_140 Hb_000345_150 Hb_000345_150 Hb_000786_040--Hb_000345_150 Hb_005214_150 Hb_005214_150 Hb_002784_010--Hb_005214_150 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030 Hb_000960_050 Hb_000960_050 Hb_000230_090--Hb_000960_050 Hb_000914_120 Hb_000914_120 Hb_000230_090--Hb_000914_120 Hb_000679_340 Hb_000679_340 Hb_000230_090--Hb_000679_340 Hb_140049_040 Hb_140049_040 Hb_000230_090--Hb_140049_040 Hb_000836_410 Hb_000836_410 Hb_000230_090--Hb_000836_410 Hb_008695_110 Hb_008695_110 Hb_000230_090--Hb_008695_110 Hb_001021_200 Hb_001021_200 Hb_005104_010--Hb_001021_200 Hb_004629_010 Hb_004629_010 Hb_005104_010--Hb_004629_010 Hb_000120_660 Hb_000120_660 Hb_005104_010--Hb_000120_660 Hb_005104_010--Hb_000345_150 Hb_003106_030 Hb_003106_030 Hb_005104_010--Hb_003106_030 Hb_008253_030--Hb_001767_140 Hb_002253_080 Hb_002253_080 Hb_008253_030--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_008253_030--Hb_002267_140 Hb_001147_110 Hb_001147_110 Hb_008253_030--Hb_001147_110 Hb_000479_220 Hb_000479_220 Hb_008253_030--Hb_000479_220 Hb_002276_240 Hb_002276_240 Hb_008253_030--Hb_002276_240 Hb_001767_140--Hb_002253_080 Hb_001767_140--Hb_002267_140 Hb_001767_140--Hb_140049_040 Hb_000174_060 Hb_000174_060 Hb_001767_140--Hb_000174_060 Hb_003866_080 Hb_003866_080 Hb_001767_140--Hb_003866_080 Hb_002022_070 Hb_002022_070 Hb_000345_150--Hb_002022_070 Hb_000345_150--Hb_004629_010 Hb_005539_090 Hb_005539_090 Hb_000345_150--Hb_005539_090 Hb_034243_020 Hb_034243_020 Hb_000345_150--Hb_034243_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1233 36.2478 22.3278 17.3606 22.6226 36.7857
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0891 10.1046 13.119 19.1097 24.4108

CAGE analysis