Hb_002784_010

Information

Type -
Description -
Location Contig2784: 6466-24240
Sequence    

Annotation

kegg
ID rcu:RCOM_1264750
description DNA-directed RNA polymerase I subunit, putative
nr
ID XP_002529996.1
description DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
swissprot
ID Q9P7X8
description Probable DNA-directed RNA polymerase I subunit RPA2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa2 PE=3 SV=2
trembl
ID B9SVH7
description DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_1264750 PE=3 SV=1
Gene Ontology
ID GO:0005829
description dna-directed rna polymerase i subunit rpa2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29074: 6083-14607 , PASA_asmbl_29075: 6789-7323 , PASA_asmbl_29076: 17398-19091 , PASA_asmbl_29078: 19157-24078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002784_010 0.0 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
2 Hb_005214_150 0.0639990417 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
3 Hb_000025_710 0.0680971001 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
4 Hb_000786_040 0.0702029966 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]
5 Hb_000010_360 0.0709770777 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
6 Hb_001191_120 0.0727242203 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
7 Hb_000261_030 0.0735552455 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
8 Hb_000377_050 0.0748427471 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
9 Hb_003739_030 0.0751424591 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
10 Hb_005104_010 0.0760829324 - - PREDICTED: uncharacterized protein LOC105140796 isoform X1 [Populus euphratica]
11 Hb_028487_010 0.077182406 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
12 Hb_005357_260 0.0783049641 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
13 Hb_009476_090 0.0793998533 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
14 Hb_012184_060 0.0797759237 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
15 Hb_001959_270 0.079913471 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_000170_150 0.0799533552 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
17 Hb_000788_070 0.0803536821 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
18 Hb_004884_150 0.0809950905 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
19 Hb_003124_160 0.0815946519 - - dynamin, putative [Ricinus communis]
20 Hb_000914_120 0.0818264985 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002784_010 Hb_002784_010 Hb_005214_150 Hb_005214_150 Hb_002784_010--Hb_005214_150 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_000010_360 Hb_000010_360 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_000261_030 Hb_000261_030 Hb_002784_010--Hb_000261_030 Hb_011671_230 Hb_011671_230 Hb_005214_150--Hb_011671_230 Hb_001959_270 Hb_001959_270 Hb_005214_150--Hb_001959_270 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_000025_710--Hb_001191_120 Hb_000176_100 Hb_000176_100 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_000230_090 Hb_000230_090 Hb_000786_040--Hb_000230_090 Hb_005104_010 Hb_005104_010 Hb_000786_040--Hb_005104_010 Hb_008253_030 Hb_008253_030 Hb_000786_040--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_000786_040--Hb_001767_140 Hb_000345_150 Hb_000345_150 Hb_000786_040--Hb_000345_150 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000640_310 Hb_000640_310 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_000671_070 Hb_000671_070 Hb_001191_120--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_001191_120--Hb_000025_320 Hb_002350_010 Hb_002350_010 Hb_001191_120--Hb_002350_010 Hb_000243_210 Hb_000243_210 Hb_001191_120--Hb_000243_210 Hb_000914_120 Hb_000914_120 Hb_001191_120--Hb_000914_120 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.29557 14.0252 7.2639 4.89797 9.62951 12.0978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.96734 4.13708 4.16235 9.8251 9.43586

CAGE analysis