Hb_000327_080

Information

Type -
Description -
Location Contig327: 90785-102610
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22310g
description POPTRDRAFT_886092; hypothetical protein
nr
ID XP_012073660.1
description PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
swissprot
ID F4IUX6
description Regulator of nonsense transcripts UPF2 OS=Arabidopsis thaliana GN=UPF2 PE=2 SV=1
trembl
ID A0A067LFU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06659 PE=4 SV=1
Gene Ontology
ID GO:0003723
description regulator of nonsense transcripts upf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34367: 93120-93558 , PASA_asmbl_34368: 92244-96460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000327_080 0.0 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
2 Hb_005214_150 0.0718159396 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
3 Hb_009449_090 0.0842956157 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
4 Hb_007818_040 0.0911110543 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
5 Hb_011671_230 0.0923817521 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002571_030 0.0951060498 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
7 Hb_007576_220 0.0977215303 - - PREDICTED: kanadaptin [Jatropha curcas]
8 Hb_001231_030 0.0985302557 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
9 Hb_000577_030 0.0990234425 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
10 Hb_001959_270 0.0992530581 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_003739_030 0.1022335762 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
12 Hb_155159_010 0.102274128 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
13 Hb_000062_470 0.1024518192 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
14 Hb_179154_020 0.1025234041 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_007576_230 0.1030439774 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
16 Hb_001047_200 0.1038526202 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
17 Hb_000184_150 0.1057914298 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
18 Hb_007283_030 0.1060967715 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
19 Hb_010417_060 0.1069802669 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
20 Hb_002784_010 0.107005799 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000327_080 Hb_000327_080 Hb_005214_150 Hb_005214_150 Hb_000327_080--Hb_005214_150 Hb_009449_090 Hb_009449_090 Hb_000327_080--Hb_009449_090 Hb_007818_040 Hb_007818_040 Hb_000327_080--Hb_007818_040 Hb_011671_230 Hb_011671_230 Hb_000327_080--Hb_011671_230 Hb_002571_030 Hb_002571_030 Hb_000327_080--Hb_002571_030 Hb_007576_220 Hb_007576_220 Hb_000327_080--Hb_007576_220 Hb_002784_010 Hb_002784_010 Hb_005214_150--Hb_002784_010 Hb_005214_150--Hb_011671_230 Hb_001959_270 Hb_001959_270 Hb_005214_150--Hb_001959_270 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_009449_090--Hb_000086_050 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030 Hb_007818_040--Hb_002571_030 Hb_007818_040--Hb_007283_030 Hb_007576_230 Hb_007576_230 Hb_007818_040--Hb_007576_230 Hb_007818_040--Hb_001959_270 Hb_179154_020 Hb_179154_020 Hb_007818_040--Hb_179154_020 Hb_000377_050 Hb_000377_050 Hb_007818_040--Hb_000377_050 Hb_000949_010 Hb_000949_010 Hb_011671_230--Hb_000949_010 Hb_000768_180 Hb_000768_180 Hb_011671_230--Hb_000768_180 Hb_000176_130 Hb_000176_130 Hb_011671_230--Hb_000176_130 Hb_011671_230--Hb_002784_010 Hb_000574_510 Hb_000574_510 Hb_011671_230--Hb_000574_510 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_007305_020 Hb_007305_020 Hb_002571_030--Hb_007305_020 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_007576_220--Hb_005539_040 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.6489 33.557 17.1447 7.07088 25.106 19.8627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88568 3.56423 4.96789 20.2041 16.3893

CAGE analysis