Hb_009771_110

Information

Type -
Description -
Location Contig9771: 94580-112370
Sequence    

Annotation

kegg
ID rcu:RCOM_0644750
description double-stranded RNA binding protein, putative
nr
ID XP_012087884.1
description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
swissprot
ID Q5YDB5
description RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana GN=CPL2 PE=1 SV=3
trembl
ID B9SQ45
description Double-stranded RNA binding protein, putative OS=Ricinus communis GN=RCOM_0644750 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rna polymerase ii c-terminal domain phosphatase-like 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64200: 95226-102176 , PASA_asmbl_64201: 95807-95997 , PASA_asmbl_64205: 102918-112469
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_110 0.0 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
2 Hb_006618_090 0.0459966959 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
3 Hb_005053_010 0.0480623557 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
4 Hb_160459_040 0.0521042291 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
5 Hb_007929_080 0.0544382314 - - PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Jatropha curcas]
6 Hb_002571_030 0.0609865984 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
7 Hb_000523_080 0.0614907625 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
8 Hb_002631_140 0.0631560839 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
9 Hb_001377_110 0.0631729577 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
10 Hb_003739_030 0.0705961074 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
11 Hb_000261_030 0.071937603 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
12 Hb_013358_070 0.0733492616 - - protein with unknown function [Ricinus communis]
13 Hb_028872_070 0.0740814678 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
14 Hb_098209_010 0.0752046891 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
15 Hb_000960_050 0.0759305838 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
16 Hb_000230_090 0.0759767152 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
17 Hb_001723_140 0.0777516636 - - PREDICTED: importin beta-like SAD2 homolog isoform X2 [Jatropha curcas]
18 Hb_003638_090 0.0808560951 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
19 Hb_007305_020 0.0813980785 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
20 Hb_000082_070 0.0822910533 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009771_110 Hb_009771_110 Hb_006618_090 Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_007929_080 Hb_007929_080 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_006618_090--Hb_005053_010 Hb_002686_040 Hb_002686_040 Hb_006618_090--Hb_002686_040 Hb_006618_090--Hb_007929_080 Hb_006618_090--Hb_000523_080 Hb_000261_030 Hb_000261_030 Hb_006618_090--Hb_000261_030 Hb_005053_010--Hb_160459_040 Hb_001504_040 Hb_001504_040 Hb_005053_010--Hb_001504_040 Hb_005053_010--Hb_007929_080 Hb_003104_040 Hb_003104_040 Hb_005053_010--Hb_003104_040 Hb_012053_080 Hb_012053_080 Hb_160459_040--Hb_012053_080 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_028872_070 Hb_028872_070 Hb_160459_040--Hb_028872_070 Hb_007929_080--Hb_002571_030 Hb_007929_080--Hb_000523_080 Hb_001405_190 Hb_001405_190 Hb_007929_080--Hb_001405_190 Hb_001377_110 Hb_001377_110 Hb_007929_080--Hb_001377_110 Hb_007818_040 Hb_007818_040 Hb_002571_030--Hb_007818_040 Hb_007305_020 Hb_007305_020 Hb_002571_030--Hb_007305_020 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_128548_010 Hb_128548_010 Hb_000523_080--Hb_128548_010 Hb_003943_020 Hb_003943_020 Hb_000523_080--Hb_003943_020 Hb_001723_140 Hb_001723_140 Hb_000523_080--Hb_001723_140 Hb_013358_070 Hb_013358_070 Hb_000523_080--Hb_013358_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.62856 10.3733 11.6277 6.27625 11.1052 12.5119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24947 3.20658 4.24973 9.24808 9.47993

CAGE analysis