Hb_028872_070

Information

Type desease resistance
Description Gene Name: DEAD
Location Contig28872: 42978-58672
Sequence    

Annotation

kegg
ID rcu:RCOM_1081010
description ATP-dependent RNA helicase, putative
nr
ID XP_012085640.1
description PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
swissprot
ID Q767K6
description Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1
trembl
ID A0A067JVG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17931 PE=4 SV=1
Gene Ontology
ID GO:0003676
description pre-mrna-splicing factor atp-dependent rna helicase prp1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30105: 46082-47774 , PASA_asmbl_30106: 47830-56082 , PASA_asmbl_30107: 57633-58417 , PASA_asmbl_30108: 58590-59176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028872_070 0.0 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
2 Hb_000603_030 0.0537428653 - - Ribonuclease III, putative [Ricinus communis]
3 Hb_000398_080 0.0662134761 - - tip120, putative [Ricinus communis]
4 Hb_160459_040 0.0675147194 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
5 Hb_004096_190 0.072279588 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
6 Hb_009771_110 0.0740814678 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
7 Hb_133702_030 0.0741367962 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
8 Hb_019654_040 0.0762793873 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
9 Hb_003645_060 0.0763275885 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
10 Hb_002805_190 0.0764379604 - - spliceosome associated protein, putative [Ricinus communis]
11 Hb_001935_110 0.0777197429 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
12 Hb_000563_130 0.0783377051 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
13 Hb_005289_040 0.0785462214 - - poly(A) polymerase, putative [Ricinus communis]
14 Hb_012053_080 0.07877744 - - AP-2 complex subunit alpha, putative [Ricinus communis]
15 Hb_000523_080 0.07883126 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
16 Hb_000252_050 0.0788397576 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
17 Hb_002681_090 0.0794304407 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
18 Hb_007657_020 0.0794893935 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
19 Hb_128548_010 0.0806798969 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000082_010 0.0808255085 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]

Gene co-expression network

sample Hb_028872_070 Hb_028872_070 Hb_000603_030 Hb_000603_030 Hb_028872_070--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_028872_070--Hb_000398_080 Hb_160459_040 Hb_160459_040 Hb_028872_070--Hb_160459_040 Hb_004096_190 Hb_004096_190 Hb_028872_070--Hb_004096_190 Hb_009771_110 Hb_009771_110 Hb_028872_070--Hb_009771_110 Hb_133702_030 Hb_133702_030 Hb_028872_070--Hb_133702_030 Hb_000603_030--Hb_000398_080 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_004267_040 Hb_000398_080--Hb_000563_130 Hb_005053_010 Hb_005053_010 Hb_160459_040--Hb_005053_010 Hb_160459_040--Hb_009771_110 Hb_012053_080 Hb_012053_080 Hb_160459_040--Hb_012053_080 Hb_000261_030 Hb_000261_030 Hb_160459_040--Hb_000261_030 Hb_002631_140 Hb_002631_140 Hb_160459_040--Hb_002631_140 Hb_004096_190--Hb_000603_030 Hb_003943_020 Hb_003943_020 Hb_004096_190--Hb_003943_020 Hb_000134_270 Hb_000134_270 Hb_004096_190--Hb_000134_270 Hb_001733_030 Hb_001733_030 Hb_004096_190--Hb_001733_030 Hb_004096_190--Hb_000398_080 Hb_006618_090 Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_009771_110--Hb_005053_010 Hb_007929_080 Hb_007929_080 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_133702_030--Hb_001733_030 Hb_000182_040 Hb_000182_040 Hb_133702_030--Hb_000182_040 Hb_001454_370 Hb_001454_370 Hb_133702_030--Hb_001454_370 Hb_000120_280 Hb_000120_280 Hb_133702_030--Hb_000120_280 Hb_133702_030--Hb_007657_020 Hb_133702_030--Hb_000603_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.11828 2.77229 3.63537 2.49865 2.98798 4.14106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.8141 1.32001 1.75217 4.15368 2.99508

CAGE analysis