Hb_004267_040

Information

Type -
Description -
Location Contig4267: 58423-65746
Sequence    

Annotation

kegg
ID rcu:RCOM_1592950
description transcriptional adaptor, putative
nr
ID XP_012071741.1
description PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
swissprot
ID Q75LL6
description Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2
trembl
ID A0A067KTX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04353 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcriptional adapter ada2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42038: 58569-60029 , PASA_asmbl_42039: 61346-62503 , PASA_asmbl_42040: 61723-62503 , PASA_asmbl_42041: 62555-64546 , PASA_asmbl_42042: 64682-65731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004267_040 0.0 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
2 Hb_000011_100 0.0446715111 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
3 Hb_000120_280 0.0486933041 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
4 Hb_000563_130 0.0518571062 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
5 Hb_005588_090 0.0571932077 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
6 Hb_000398_080 0.0586951249 - - tip120, putative [Ricinus communis]
7 Hb_000603_030 0.0613262895 - - Ribonuclease III, putative [Ricinus communis]
8 Hb_003645_060 0.0613298974 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
9 Hb_116349_070 0.0657984622 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
10 Hb_002311_290 0.0683546779 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
11 Hb_002375_010 0.0689827745 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
12 Hb_003436_020 0.0691265048 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
13 Hb_007657_020 0.0704099694 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
14 Hb_183510_020 0.0708316836 - - coated vesicle membrane protein, putative [Ricinus communis]
15 Hb_001369_130 0.0712097219 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
16 Hb_003861_050 0.0718185373 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
17 Hb_001814_030 0.0728884574 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
18 Hb_002681_090 0.0730117845 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
19 Hb_000935_010 0.0732733148 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
20 Hb_000975_040 0.0740286263 - - hypothetical protein CICLE_v10028249mg [Citrus clementina]

Gene co-expression network

sample Hb_004267_040 Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_000563_130 Hb_000563_130 Hb_004267_040--Hb_000563_130 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_004267_040--Hb_000398_080 Hb_000603_030 Hb_000603_030 Hb_004267_040--Hb_000603_030 Hb_000710_040 Hb_000710_040 Hb_000011_100--Hb_000710_040 Hb_001430_080 Hb_001430_080 Hb_000011_100--Hb_001430_080 Hb_000011_100--Hb_000398_080 Hb_000011_100--Hb_000120_280 Hb_000011_100--Hb_000563_130 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_003645_060 Hb_003645_060 Hb_000563_130--Hb_003645_060 Hb_000563_130--Hb_000603_030 Hb_000563_130--Hb_000398_080 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005289_040 Hb_005289_040 Hb_005588_090--Hb_005289_040 Hb_004785_100 Hb_004785_100 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_001821_160 Hb_001821_160 Hb_005588_090--Hb_001821_160 Hb_007657_020 Hb_007657_020 Hb_000398_080--Hb_007657_020 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000398_080--Hb_000603_030 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000603_030--Hb_007657_020 Hb_000603_030--Hb_002681_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.96841 4.55453 4.79321 3.92514 6.33602 4.25051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98486 3.12571 3.0148 5.97585 3.98096

CAGE analysis