Hb_004785_100

Information

Type -
Description -
Location Contig4785: 121907-130051
Sequence    

Annotation

kegg
ID rcu:RCOM_1170350
description hypothetical protein
nr
ID XP_002533013.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9T444
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1170350 PE=4 SV=1
Gene Ontology
ID GO:0000166
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44564: 122278-123958 , PASA_asmbl_44566: 128540-128900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004785_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_131646_010 0.0386568894 - - protein arginine n-methyltransferase, putative [Ricinus communis]
3 Hb_002835_230 0.0431762993 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_002686_250 0.0520389229 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
5 Hb_001821_160 0.0556876751 - - serine/arginine rich splicing factor, putative [Ricinus communis]
6 Hb_006960_050 0.0590131738 - - PREDICTED: PRKR-interacting protein 1 [Jatropha curcas]
7 Hb_002078_110 0.0606694894 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
8 Hb_005588_090 0.0617272546 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
9 Hb_005965_030 0.0621118909 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
10 Hb_012753_170 0.0664273418 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
11 Hb_004055_150 0.0675210253 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004209_020 0.0679497671 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
13 Hb_022256_060 0.0687116407 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
14 Hb_003018_130 0.0703733813 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
15 Hb_006620_020 0.0706533012 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
16 Hb_003029_030 0.0709897826 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
17 Hb_001433_070 0.0712681797 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
18 Hb_000160_350 0.0737656747 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
19 Hb_000853_230 0.0760982987 - - syntaxin, putative [Ricinus communis]
20 Hb_002684_040 0.0761427101 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004785_100 Hb_004785_100 Hb_131646_010 Hb_131646_010 Hb_004785_100--Hb_131646_010 Hb_002835_230 Hb_002835_230 Hb_004785_100--Hb_002835_230 Hb_002686_250 Hb_002686_250 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_002078_110 Hb_002078_110 Hb_004785_100--Hb_002078_110 Hb_131646_010--Hb_002686_250 Hb_131646_010--Hb_002835_230 Hb_003029_030 Hb_003029_030 Hb_131646_010--Hb_003029_030 Hb_131646_010--Hb_002078_110 Hb_001347_040 Hb_001347_040 Hb_131646_010--Hb_001347_040 Hb_002835_230--Hb_002078_110 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_004055_150 Hb_004055_150 Hb_002686_250--Hb_004055_150 Hb_002686_250--Hb_003029_030 Hb_001926_030 Hb_001926_030 Hb_002686_250--Hb_001926_030 Hb_002686_250--Hb_002078_110 Hb_000331_110 Hb_000331_110 Hb_001821_160--Hb_000331_110 Hb_079526_030 Hb_079526_030 Hb_001821_160--Hb_079526_030 Hb_012753_170 Hb_012753_170 Hb_001821_160--Hb_012753_170 Hb_005588_090 Hb_005588_090 Hb_001821_160--Hb_005588_090 Hb_022256_060 Hb_022256_060 Hb_001821_160--Hb_022256_060 Hb_000649_070 Hb_000649_070 Hb_006960_050--Hb_000649_070 Hb_006960_050--Hb_004055_150 Hb_006620_020 Hb_006620_020 Hb_006960_050--Hb_006620_020 Hb_020367_050 Hb_020367_050 Hb_006960_050--Hb_020367_050 Hb_006960_050--Hb_002686_250 Hb_000309_040 Hb_000309_040 Hb_002078_110--Hb_000309_040 Hb_000928_220 Hb_000928_220 Hb_002078_110--Hb_000928_220 Hb_000070_080 Hb_000070_080 Hb_002078_110--Hb_000070_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83752 1.51272 1.70766 1.18292 2.62945 1.73106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.27511 1.21525 1.00275 1.28222 1.04708

CAGE analysis