Hb_002823_030

Information

Type -
Description -
Location Contig2823: 29065-32518
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29581: 13981-32001 , PASA_asmbl_29582: 14880-30242
cDNA
(Sanger)
(ID:Location)		 018_B09.ab1: 32008-32581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002823_030 0.0 - - -
2 Hb_003680_150 0.034194185 - - srpk, putative [Ricinus communis]
3 Hb_000190_120 0.052800767 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
4 Hb_003371_110 0.0548783282 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
5 Hb_002835_230 0.0549354976 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
6 Hb_014361_070 0.0551983011 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
7 Hb_003018_130 0.0614567179 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
8 Hb_007576_110 0.061755899 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
9 Hb_002174_020 0.0621227075 - - ring finger protein, putative [Ricinus communis]
10 Hb_016898_010 0.0632081928 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
11 Hb_008159_020 0.0649985518 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
12 Hb_009175_020 0.0653580468 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
13 Hb_003362_070 0.0654590955 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
14 Hb_010222_050 0.0659866647 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
15 Hb_001195_560 0.0688023475 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
16 Hb_001454_280 0.0691683087 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
17 Hb_000926_190 0.070110438 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
18 Hb_000429_220 0.0702489931 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
19 Hb_000484_030 0.070568507 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
20 Hb_004128_050 0.0707582974 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002823_030 Hb_002823_030 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002835_230 Hb_002835_230 Hb_002823_030--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_002823_030--Hb_014361_070 Hb_003018_130 Hb_003018_130 Hb_002823_030--Hb_003018_130 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_000190_120--Hb_007576_110 Hb_000190_120--Hb_003371_110 Hb_000347_070 Hb_000347_070 Hb_000190_120--Hb_000347_070 Hb_009175_020 Hb_009175_020 Hb_000190_120--Hb_009175_020 Hb_000190_120--Hb_003680_150 Hb_003371_110--Hb_014361_070 Hb_001195_320 Hb_001195_320 Hb_003371_110--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_003371_110--Hb_000166_130 Hb_004935_030 Hb_004935_030 Hb_003371_110--Hb_004935_030 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002835_230--Hb_014361_070 Hb_000975_040 Hb_000975_040 Hb_014361_070--Hb_000975_040 Hb_014361_070--Hb_007576_110 Hb_000289_040 Hb_000289_040 Hb_014361_070--Hb_000289_040 Hb_014361_070--Hb_001195_320 Hb_002749_110 Hb_002749_110 Hb_003018_130--Hb_002749_110 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_003018_130--Hb_004785_100 Hb_000574_440 Hb_000574_440 Hb_003018_130--Hb_000574_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4531 10.5821 6.58287 8.41579 14.1477 14.7563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.97732 8.83584 6.98468 8.57256 8.09525

CAGE analysis