Hb_023480_010

Information

Type -
Description -
Location Contig23480: 17468-22870
Sequence    

Annotation

kegg
ID rcu:RCOM_0737300
description cellular nucleic acid binding protein, putative
nr
ID XP_002527559.1
description cellular nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9HFF2
description Uncharacterized protein C683.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC683.02c PE=3 SV=1
trembl
ID B9SNJ0
description Cellular nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0737300 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc knuckle family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24598: 17505-22862 , PASA_asmbl_24599: 19539-19714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023480_010 0.0 - - cellular nucleic acid binding protein, putative [Ricinus communis]
2 Hb_003680_150 0.0621866421 - - srpk, putative [Ricinus communis]
3 Hb_000983_150 0.0642260854 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
4 Hb_000544_090 0.0645691133 - - PREDICTED: golgin candidate 2 [Jatropha curcas]
5 Hb_002684_040 0.066709949 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
6 Hb_003025_110 0.0678225489 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
7 Hb_000853_230 0.0703377536 - - syntaxin, putative [Ricinus communis]
8 Hb_002045_240 0.0710014534 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
9 Hb_003438_050 0.0723373036 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
10 Hb_007441_130 0.0736177421 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_006252_040 0.0736420649 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
12 Hb_005993_050 0.0741166781 - - Protein AFR, putative [Ricinus communis]
13 Hb_000498_010 0.074252668 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000367_010 0.0752371894 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
15 Hb_000025_110 0.0762644247 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
16 Hb_000777_050 0.0768848829 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
17 Hb_009467_060 0.0774421229 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
18 Hb_023386_040 0.0779147548 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
19 Hb_001444_010 0.0787839705 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
20 Hb_000020_190 0.0788016219 - - hypothetical protein RCOM_0452240 [Ricinus communis]

Gene co-expression network

sample Hb_023480_010 Hb_023480_010 Hb_003680_150 Hb_003680_150 Hb_023480_010--Hb_003680_150 Hb_000983_150 Hb_000983_150 Hb_023480_010--Hb_000983_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_003680_150--Hb_000853_230 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_005993_050 Hb_005993_050 Hb_000544_090--Hb_005993_050 Hb_003609_030 Hb_003609_030 Hb_000544_090--Hb_003609_030 Hb_008406_200 Hb_008406_200 Hb_000544_090--Hb_008406_200 Hb_000915_020 Hb_000915_020 Hb_000544_090--Hb_000915_020 Hb_000457_260 Hb_000457_260 Hb_000544_090--Hb_000457_260 Hb_000777_050 Hb_000777_050 Hb_002684_040--Hb_000777_050 Hb_183612_040 Hb_183612_040 Hb_002684_040--Hb_183612_040 Hb_003878_110 Hb_003878_110 Hb_002684_040--Hb_003878_110 Hb_000462_060 Hb_000462_060 Hb_002684_040--Hb_000462_060 Hb_001635_040 Hb_001635_040 Hb_002684_040--Hb_001635_040 Hb_002684_040--Hb_000853_230 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_006620_020 Hb_006620_020 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000879_200 Hb_000879_200 Hb_000853_230--Hb_000879_200 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.849 12.4468 12.5188 12.6643 17.4846 24.9706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1962 10.8323 12.1557 13.5842 14.3228

CAGE analysis