Hb_007575_050

Information

Type transcription factor
Description TF Family: BBR-BPC
Location Contig7575: 75099-76805
Sequence    

Annotation

kegg
ID rcu:RCOM_1596660
description hypothetical protein
nr
ID XP_012073849.1
description PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
swissprot
ID Q8L999
description Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1
trembl
ID A0A067KPK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08249 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57091: 75099-78190 , PASA_asmbl_57094: 77656-78060
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007575_050 0.0 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
2 Hb_003878_070 0.0509762098 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
3 Hb_000225_040 0.0577514736 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
4 Hb_004954_070 0.0580918814 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
5 Hb_003025_110 0.0584439466 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
6 Hb_002518_280 0.060436495 - - phosphate transporter [Manihot esculenta]
7 Hb_004412_010 0.0623856732 - - -
8 Hb_004410_030 0.0643839295 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_031284_040 0.0647584426 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
10 Hb_003525_010 0.0653088466 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
11 Hb_010618_010 0.0679357422 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
12 Hb_000011_200 0.0687689669 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
13 Hb_167498_010 0.0691111616 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
14 Hb_000028_480 0.0697039569 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
15 Hb_004143_060 0.0705367573 - - DNA binding protein, putative [Ricinus communis]
16 Hb_007054_060 0.0711910956 - - -
17 Hb_030736_100 0.0715570295 - - conserved hypothetical protein [Ricinus communis]
18 Hb_044728_010 0.0727105693 - - -
19 Hb_002271_030 0.0747359237 - - Vacuolar protein sorting protein, putative [Ricinus communis]
20 Hb_110291_010 0.0753968237 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007575_050 Hb_007575_050 Hb_003878_070 Hb_003878_070 Hb_007575_050--Hb_003878_070 Hb_000225_040 Hb_000225_040 Hb_007575_050--Hb_000225_040 Hb_004954_070 Hb_004954_070 Hb_007575_050--Hb_004954_070 Hb_003025_110 Hb_003025_110 Hb_007575_050--Hb_003025_110 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004412_010 Hb_004412_010 Hb_007575_050--Hb_004412_010 Hb_000334_280 Hb_000334_280 Hb_003878_070--Hb_000334_280 Hb_110291_010 Hb_110291_010 Hb_003878_070--Hb_110291_010 Hb_007054_060 Hb_007054_060 Hb_003878_070--Hb_007054_060 Hb_003525_010 Hb_003525_010 Hb_003878_070--Hb_003525_010 Hb_003125_120 Hb_003125_120 Hb_003878_070--Hb_003125_120 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000011_230 Hb_000011_230 Hb_004954_070--Hb_000011_230 Hb_017862_020 Hb_017862_020 Hb_004954_070--Hb_017862_020 Hb_004410_030 Hb_004410_030 Hb_004954_070--Hb_004410_030 Hb_004954_070--Hb_000225_040 Hb_031284_040 Hb_031284_040 Hb_004954_070--Hb_031284_040 Hb_003025_110--Hb_004410_030 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_002518_280--Hb_010618_010 Hb_000152_380 Hb_000152_380 Hb_002518_280--Hb_000152_380 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_004412_010--Hb_023386_020 Hb_004412_010--Hb_003878_070 Hb_165928_020 Hb_165928_020 Hb_004412_010--Hb_165928_020 Hb_016898_010 Hb_016898_010 Hb_004412_010--Hb_016898_010 Hb_023386_040 Hb_023386_040 Hb_004412_010--Hb_023386_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9214 21.0705 16.7663 13.9362 24.7212 35.2634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1548 25.9271 20.6249 25.2833 20.6976

CAGE analysis