Hb_000152_380

Information

Type -
Description -
Location Contig152: 341752-351034
Sequence    

Annotation

kegg
ID cit:102620775
description hypersensitive-induced response protein 4-like
nr
ID XP_012090404.1
description PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
swissprot
ID Q9FHM7
description Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana GN=HIR4 PE=1 SV=1
trembl
ID A0A067JER7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26222 PE=4 SV=1
Gene Ontology
ID GO:0005774
description hypersensitive-induced response protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12993: 348363-351040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_380 0.0 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
2 Hb_002518_280 0.0547226985 - - phosphate transporter [Manihot esculenta]
3 Hb_004310_150 0.0569354991 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
4 Hb_000780_230 0.0573381412 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
5 Hb_010618_010 0.0576080221 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
6 Hb_001248_060 0.0579794548 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004221_020 0.0609723926 - - protein binding protein, putative [Ricinus communis]
8 Hb_001493_030 0.0628190366 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
9 Hb_002248_080 0.0628593495 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
10 Hb_000051_070 0.0640850533 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
11 Hb_010222_050 0.0645527712 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
12 Hb_000879_200 0.0665170988 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
13 Hb_002025_020 0.0666463849 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
14 Hb_000563_320 0.0668707107 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
15 Hb_000010_330 0.0688948136 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
16 Hb_003058_190 0.0689703818 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
17 Hb_007317_110 0.0690835159 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
18 Hb_001409_020 0.0694117218 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
19 Hb_000038_170 0.0698065885 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
20 Hb_010712_030 0.0698083682 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000152_380 Hb_000152_380 Hb_002518_280 Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_002518_280--Hb_010618_010 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_002518_280--Hb_004310_150 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_000796_030 Hb_000796_030 Hb_000780_230--Hb_000796_030 Hb_002025_020 Hb_002025_020 Hb_000780_230--Hb_002025_020 Hb_013399_100 Hb_013399_100 Hb_000780_230--Hb_013399_100 Hb_001409_020 Hb_001409_020 Hb_000780_230--Hb_001409_020 Hb_000366_120 Hb_000366_120 Hb_000780_230--Hb_000366_120 Hb_010618_010--Hb_001248_060 Hb_010618_010--Hb_001409_020 Hb_015934_040 Hb_015934_040 Hb_010618_010--Hb_015934_040 Hb_000225_040 Hb_000225_040 Hb_010618_010--Hb_000225_040 Hb_011995_010 Hb_011995_010 Hb_010618_010--Hb_011995_010 Hb_001248_060--Hb_001409_020 Hb_001248_060--Hb_011995_010 Hb_000289_060 Hb_000289_060 Hb_001248_060--Hb_000289_060 Hb_001248_060--Hb_015934_040 Hb_001408_040 Hb_001408_040 Hb_001248_060--Hb_001408_040 Hb_002835_370 Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_000072_220 Hb_000072_220 Hb_004221_020--Hb_000072_220 Hb_004221_020--Hb_002025_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.3336 28.2648 19.8549 23.4857 44.1923 37.2999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.3484 32.0692 32.8912 22.3244 17.8744

CAGE analysis