Hb_000165_250

Information

Type -
Description -
Location Contig165: 214689-215555
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13200g
description POPTRDRAFT_750959; hypothetical protein
nr
ID XP_012088737.1
description PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
swissprot
ID Q24009
description Protein bicaudal C OS=Drosophila melanogaster GN=BicC PE=1 SV=2
trembl
ID A0A067JKF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23111 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat and sam domain-containing protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_250 0.0 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
2 Hb_000029_050 0.0289186168 - - expressed protein, putative [Ricinus communis]
3 Hb_004221_020 0.0529914479 - - protein binding protein, putative [Ricinus communis]
4 Hb_006649_050 0.0585798607 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
5 Hb_017358_030 0.0595935196 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
6 Hb_005496_130 0.0620235685 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
7 Hb_000291_050 0.0645026139 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
8 Hb_009767_110 0.0668540082 - - -
9 Hb_023386_020 0.0699900548 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
10 Hb_000072_220 0.0704254194 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
11 Hb_008643_210 0.0714974136 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
12 Hb_002518_280 0.0720359705 - - phosphate transporter [Manihot esculenta]
13 Hb_007416_180 0.0720601161 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
14 Hb_000201_100 0.0722422628 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
15 Hb_044728_010 0.0722646207 - - -
16 Hb_002725_120 0.0725494837 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
17 Hb_027295_050 0.0737517644 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Jatropha curcas]
18 Hb_001675_180 0.0737664533 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
19 Hb_002835_370 0.0740589921 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
20 Hb_001409_020 0.0740862977 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]

Gene co-expression network

sample Hb_000165_250 Hb_000165_250 Hb_000029_050 Hb_000029_050 Hb_000165_250--Hb_000029_050 Hb_004221_020 Hb_004221_020 Hb_000165_250--Hb_004221_020 Hb_006649_050 Hb_006649_050 Hb_000165_250--Hb_006649_050 Hb_017358_030 Hb_017358_030 Hb_000165_250--Hb_017358_030 Hb_005496_130 Hb_005496_130 Hb_000165_250--Hb_005496_130 Hb_000291_050 Hb_000291_050 Hb_000165_250--Hb_000291_050 Hb_000029_050--Hb_004221_020 Hb_005993_050 Hb_005993_050 Hb_000029_050--Hb_005993_050 Hb_023386_020 Hb_023386_020 Hb_000029_050--Hb_023386_020 Hb_005779_080 Hb_005779_080 Hb_000029_050--Hb_005779_080 Hb_001409_020 Hb_001409_020 Hb_000029_050--Hb_001409_020 Hb_002835_370 Hb_002835_370 Hb_004221_020--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000072_220 Hb_000072_220 Hb_004221_020--Hb_000072_220 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_009767_110 Hb_009767_110 Hb_006649_050--Hb_009767_110 Hb_002725_120 Hb_002725_120 Hb_006649_050--Hb_002725_120 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_001198_100 Hb_001198_100 Hb_006649_050--Hb_001198_100 Hb_006649_050--Hb_000291_050 Hb_000866_260 Hb_000866_260 Hb_017358_030--Hb_000866_260 Hb_007389_010 Hb_007389_010 Hb_017358_030--Hb_007389_010 Hb_002739_100 Hb_002739_100 Hb_017358_030--Hb_002739_100 Hb_017358_030--Hb_000029_050 Hb_000917_060 Hb_000917_060 Hb_017358_030--Hb_000917_060 Hb_008554_130 Hb_008554_130 Hb_005496_130--Hb_008554_130 Hb_005496_130--Hb_000291_050 Hb_005496_130--Hb_009767_110 Hb_005496_130--Hb_002725_120 Hb_005496_130--Hb_000029_050 Hb_000291_050--Hb_002725_120 Hb_000291_050--Hb_005779_080 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.0832 19.8228 13.4636 13.6771 25.2398 25.3472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4922 23.4035 25.9257 12.7261 21.7359

CAGE analysis