Hb_000072_220

Information

Type -
Description -
Location Contig72: 349912-351882
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14350g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012088121.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
swissprot
ID Q9M891
description Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1
trembl
ID A0A067JK34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25637 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55601: 349991-351917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_220 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
2 Hb_004221_020 0.054001299 - - protein binding protein, putative [Ricinus communis]
3 Hb_002835_370 0.0554390818 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
4 Hb_010139_040 0.0574741995 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_172632_080 0.0600530621 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
6 Hb_009548_020 0.0615606215 - - structural constituent of cell wall, putative [Ricinus communis]
7 Hb_001675_180 0.064226718 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
8 Hb_000165_250 0.0704254194 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
9 Hb_048937_040 0.0708941807 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
10 Hb_000029_050 0.0718810791 - - expressed protein, putative [Ricinus communis]
11 Hb_002311_040 0.0760929787 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
12 Hb_005054_180 0.0765265573 - - coronatine-insensitive 1 [Hevea brasiliensis]
13 Hb_004724_060 0.076958859 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
14 Hb_000365_390 0.0771981055 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
15 Hb_000820_170 0.0783446386 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
16 Hb_011139_030 0.0796289089 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
17 Hb_002025_020 0.0799298149 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
18 Hb_010457_030 0.0805829448 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
19 Hb_000457_260 0.0806665288 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
20 Hb_005993_050 0.0809228727 - - Protein AFR, putative [Ricinus communis]

Gene co-expression network

sample Hb_000072_220 Hb_000072_220 Hb_004221_020 Hb_004221_020 Hb_000072_220--Hb_004221_020 Hb_002835_370 Hb_002835_370 Hb_000072_220--Hb_002835_370 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_009548_020 Hb_009548_020 Hb_000072_220--Hb_009548_020 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_004221_020--Hb_002835_370 Hb_004221_020--Hb_010139_040 Hb_000289_060 Hb_000289_060 Hb_004221_020--Hb_000289_060 Hb_000165_250 Hb_000165_250 Hb_004221_020--Hb_000165_250 Hb_002025_020 Hb_002025_020 Hb_004221_020--Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_002835_370--Hb_009548_020 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_010457_030 Hb_010457_030 Hb_010139_040--Hb_010457_030 Hb_048937_040 Hb_048937_040 Hb_010139_040--Hb_048937_040 Hb_003728_080 Hb_003728_080 Hb_010139_040--Hb_003728_080 Hb_010139_040--Hb_002835_370 Hb_009218_010 Hb_009218_010 Hb_172632_080--Hb_009218_010 Hb_001199_100 Hb_001199_100 Hb_172632_080--Hb_001199_100 Hb_172632_080--Hb_009548_020 Hb_000457_260 Hb_000457_260 Hb_172632_080--Hb_000457_260 Hb_188063_020 Hb_188063_020 Hb_172632_080--Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_044728_010 Hb_044728_010 Hb_001675_180--Hb_044728_010 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_001675_180--Hb_000165_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.9499 14.9361 9.87018 12.476 20.9192 28.8698
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5652 16.2248 24.9736 13.9314 16.3174

CAGE analysis