Hb_008643_210

Information

Type -
Description -
Location Contig8643: 194242-209959
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10770g
description POPTRDRAFT_887004; hypothetical protein
nr
ID XP_012084890.1
description PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5J8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20308 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60900: 194126-209962 , PASA_asmbl_60901: 193998-209788 , PASA_asmbl_60902: 194126-209962 , PASA_asmbl_60903: 209021-209349 , PASA_asmbl_60904: 206673-207091
cDNA
(Sanger)
(ID:Location)		 022_N10.ab1: 194126-194272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008643_210 0.0 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
2 Hb_016172_020 0.0545004034 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
3 Hb_002045_240 0.0567059398 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
4 Hb_004841_010 0.0608859331 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_000060_090 0.0609171377 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
6 Hb_023386_020 0.0663464384 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
7 Hb_000010_330 0.0671165635 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
8 Hb_000029_050 0.0693783872 - - expressed protein, putative [Ricinus communis]
9 Hb_001409_020 0.0701737832 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
10 Hb_165928_020 0.0706461916 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
11 Hb_001675_180 0.0708375355 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
12 Hb_000165_250 0.0714974136 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
13 Hb_010222_050 0.0716428296 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
14 Hb_002518_280 0.0724524483 - - phosphate transporter [Manihot esculenta]
15 Hb_007075_040 0.0726273091 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
16 Hb_000562_090 0.0738854804 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
17 Hb_033720_010 0.0741011232 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
18 Hb_000879_200 0.0744616875 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
19 Hb_002716_130 0.0762642299 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
20 Hb_009548_020 0.0765418996 - - structural constituent of cell wall, putative [Ricinus communis]

Gene co-expression network

sample Hb_008643_210 Hb_008643_210 Hb_016172_020 Hb_016172_020 Hb_008643_210--Hb_016172_020 Hb_002045_240 Hb_002045_240 Hb_008643_210--Hb_002045_240 Hb_004841_010 Hb_004841_010 Hb_008643_210--Hb_004841_010 Hb_000060_090 Hb_000060_090 Hb_008643_210--Hb_000060_090 Hb_023386_020 Hb_023386_020 Hb_008643_210--Hb_023386_020 Hb_000010_330 Hb_000010_330 Hb_008643_210--Hb_000010_330 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_001409_020 Hb_001409_020 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_154745_010 Hb_154745_010 Hb_002045_240--Hb_154745_010 Hb_023386_040 Hb_023386_040 Hb_002045_240--Hb_023386_040 Hb_006252_040 Hb_006252_040 Hb_002045_240--Hb_006252_040 Hb_001097_050 Hb_001097_050 Hb_002045_240--Hb_001097_050 Hb_023480_010 Hb_023480_010 Hb_002045_240--Hb_023480_010 Hb_165928_020 Hb_165928_020 Hb_004841_010--Hb_165928_020 Hb_004841_010--Hb_023386_020 Hb_004841_010--Hb_016172_020 Hb_000856_110 Hb_000856_110 Hb_004841_010--Hb_000856_110 Hb_004100_080 Hb_004100_080 Hb_004841_010--Hb_004100_080 Hb_013399_100 Hb_013399_100 Hb_000060_090--Hb_013399_100 Hb_000060_090--Hb_001409_020 Hb_000029_300 Hb_000029_300 Hb_000060_090--Hb_000029_300 Hb_105105_020 Hb_105105_020 Hb_000060_090--Hb_105105_020 Hb_010222_050 Hb_010222_050 Hb_000060_090--Hb_010222_050 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_002518_280 Hb_002518_280 Hb_023386_020--Hb_002518_280 Hb_033720_010 Hb_033720_010 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010 Hb_000879_200 Hb_000879_200 Hb_023386_020--Hb_000879_200 Hb_007904_200 Hb_007904_200 Hb_000010_330--Hb_007904_200 Hb_010457_030 Hb_010457_030 Hb_000010_330--Hb_010457_030 Hb_019280_040 Hb_019280_040 Hb_000010_330--Hb_019280_040 Hb_003665_060 Hb_003665_060 Hb_000010_330--Hb_003665_060 Hb_002200_080 Hb_002200_080 Hb_000010_330--Hb_002200_080 Hb_048937_040 Hb_048937_040 Hb_000010_330--Hb_048937_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0166 13.2696 10.4193 12.1353 16.297 24.613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0934 15.2741 15.1276 8.31854 13.6393

CAGE analysis