Hb_001097_050

Information

Type -
Description -
Location Contig1097: 18219-19607
Sequence    

Annotation

kegg
ID rcu:RCOM_0905670
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002518527.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49558
description Pentatricopeptide repeat-containing protein At4g21170 OS=Arabidopsis thaliana GN=At4g21170 PE=3 SV=2
trembl
ID B9RXQ8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0905670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02893: 19039-19523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001097_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000099_080 0.0693027219 - - kinesin light chain, putative [Ricinus communis]
3 Hb_002045_240 0.0698439574 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
4 Hb_000347_180 0.0702776732 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
5 Hb_001538_130 0.0751395487 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002477_280 0.0803666081 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
7 Hb_000365_390 0.0805265089 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
8 Hb_007416_180 0.0829307003 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
9 Hb_000181_070 0.0845762375 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001213_050 0.0845800803 - - PREDICTED: uncharacterized protein LOC105646665 isoform X1 [Jatropha curcas]
11 Hb_001248_060 0.084584937 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003609_030 0.0847088013 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
13 Hb_001252_010 0.0847339339 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
14 Hb_000085_160 0.085079235 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
15 Hb_000457_260 0.0854038352 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
16 Hb_002823_030 0.0863889918 - - -
17 Hb_008643_210 0.0867276461 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
18 Hb_011173_040 0.0869968457 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Populus euphratica]
19 Hb_000484_030 0.0876958994 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Jatropha curcas]
20 Hb_001638_170 0.0882128645 - - hypothetical protein Csa_3G118170 [Cucumis sativus]

Gene co-expression network

sample Hb_001097_050 Hb_001097_050 Hb_000099_080 Hb_000099_080 Hb_001097_050--Hb_000099_080 Hb_002045_240 Hb_002045_240 Hb_001097_050--Hb_002045_240 Hb_000347_180 Hb_000347_180 Hb_001097_050--Hb_000347_180 Hb_001538_130 Hb_001538_130 Hb_001097_050--Hb_001538_130 Hb_002477_280 Hb_002477_280 Hb_001097_050--Hb_002477_280 Hb_000365_390 Hb_000365_390 Hb_001097_050--Hb_000365_390 Hb_010128_080 Hb_010128_080 Hb_000099_080--Hb_010128_080 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_010712_030 Hb_010712_030 Hb_000099_080--Hb_010712_030 Hb_031527_040 Hb_031527_040 Hb_000099_080--Hb_031527_040 Hb_000395_190 Hb_000395_190 Hb_000099_080--Hb_000395_190 Hb_000563_320 Hb_000563_320 Hb_000099_080--Hb_000563_320 Hb_008643_210 Hb_008643_210 Hb_002045_240--Hb_008643_210 Hb_154745_010 Hb_154745_010 Hb_002045_240--Hb_154745_010 Hb_023386_040 Hb_023386_040 Hb_002045_240--Hb_023386_040 Hb_006252_040 Hb_006252_040 Hb_002045_240--Hb_006252_040 Hb_023480_010 Hb_023480_010 Hb_002045_240--Hb_023480_010 Hb_000457_260 Hb_000457_260 Hb_000347_180--Hb_000457_260 Hb_123352_020 Hb_123352_020 Hb_000347_180--Hb_123352_020 Hb_002255_030 Hb_002255_030 Hb_000347_180--Hb_002255_030 Hb_004935_030 Hb_004935_030 Hb_000347_180--Hb_004935_030 Hb_001377_270 Hb_001377_270 Hb_000347_180--Hb_001377_270 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_005276_210 Hb_005276_210 Hb_002477_280--Hb_005276_210 Hb_000085_160 Hb_000085_160 Hb_002477_280--Hb_000085_160 Hb_004310_150 Hb_004310_150 Hb_002477_280--Hb_004310_150 Hb_003952_090 Hb_003952_090 Hb_002477_280--Hb_003952_090 Hb_003525_010 Hb_003525_010 Hb_002477_280--Hb_003525_010 Hb_000300_060 Hb_000300_060 Hb_002477_280--Hb_000300_060 Hb_010457_030 Hb_010457_030 Hb_000365_390--Hb_010457_030 Hb_000010_330 Hb_000010_330 Hb_000365_390--Hb_000010_330 Hb_000125_130 Hb_000125_130 Hb_000365_390--Hb_000125_130 Hb_007904_200 Hb_007904_200 Hb_000365_390--Hb_007904_200 Hb_001638_170 Hb_001638_170 Hb_000365_390--Hb_001638_170 Hb_148644_010 Hb_148644_010 Hb_000365_390--Hb_148644_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.34097 3.68674 1.25771 3.05367 3.4574 4.75031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.79926 3.8672 2.91741 2.30729 2.40773

CAGE analysis