Hb_001538_130

Information

Type -
Description -
Location Contig1538: 240401-242130
Sequence    

Annotation

kegg
ID rcu:RCOM_0174780
description hypothetical protein
nr
ID XP_002527493.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNC4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174780 PE=4 SV=1
Gene Ontology
ID GO:0070461
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13240: 240364-241820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001538_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000032_520 0.0597714737 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
3 Hb_001198_100 0.0661698264 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
4 Hb_000395_190 0.0670057714 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
5 Hb_000009_560 0.0677520605 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
6 Hb_015934_040 0.067827519 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
7 Hb_000035_320 0.0699449905 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22 [Jatropha curcas]
8 Hb_001799_180 0.0701878862 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
9 Hb_000099_080 0.0707596463 - - kinesin light chain, putative [Ricinus communis]
10 Hb_010128_080 0.0727431741 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
11 Hb_001377_270 0.0728051641 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
12 Hb_001097_050 0.0751395487 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_006649_050 0.0757119547 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
14 Hb_000665_060 0.0766109866 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
15 Hb_144528_010 0.0766143594 - - type II inositol 5-phosphatase, putative [Ricinus communis]
16 Hb_009767_110 0.0776098245 - - -
17 Hb_005269_040 0.0786407109 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
18 Hb_065525_040 0.079677125 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
19 Hb_001369_730 0.0800364718 - - F5O11.10, putative isoform 1 [Theobroma cacao]
20 Hb_005144_160 0.0812115673 - - PREDICTED: uncharacterized protein LOC105628018 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001538_130 Hb_001538_130 Hb_000032_520 Hb_000032_520 Hb_001538_130--Hb_000032_520 Hb_001198_100 Hb_001198_100 Hb_001538_130--Hb_001198_100 Hb_000395_190 Hb_000395_190 Hb_001538_130--Hb_000395_190 Hb_000009_560 Hb_000009_560 Hb_001538_130--Hb_000009_560 Hb_015934_040 Hb_015934_040 Hb_001538_130--Hb_015934_040 Hb_000035_320 Hb_000035_320 Hb_001538_130--Hb_000035_320 Hb_000032_520--Hb_015934_040 Hb_000003_590 Hb_000003_590 Hb_000032_520--Hb_000003_590 Hb_000792_010 Hb_000792_010 Hb_000032_520--Hb_000792_010 Hb_019863_070 Hb_019863_070 Hb_000032_520--Hb_019863_070 Hb_010618_010 Hb_010618_010 Hb_000032_520--Hb_010618_010 Hb_009767_110 Hb_009767_110 Hb_001198_100--Hb_009767_110 Hb_000028_480 Hb_000028_480 Hb_001198_100--Hb_000028_480 Hb_006649_050 Hb_006649_050 Hb_001198_100--Hb_006649_050 Hb_006915_030 Hb_006915_030 Hb_001198_100--Hb_006915_030 Hb_001409_020 Hb_001409_020 Hb_001198_100--Hb_001409_020 Hb_001341_170 Hb_001341_170 Hb_001198_100--Hb_001341_170 Hb_010128_080 Hb_010128_080 Hb_000395_190--Hb_010128_080 Hb_000260_270 Hb_000260_270 Hb_000395_190--Hb_000260_270 Hb_005731_130 Hb_005731_130 Hb_000395_190--Hb_005731_130 Hb_089032_040 Hb_089032_040 Hb_000395_190--Hb_089032_040 Hb_002078_130 Hb_002078_130 Hb_000395_190--Hb_002078_130 Hb_000099_080 Hb_000099_080 Hb_000395_190--Hb_000099_080 Hb_000192_080 Hb_000192_080 Hb_000009_560--Hb_000192_080 Hb_001377_490 Hb_001377_490 Hb_000009_560--Hb_001377_490 Hb_000009_560--Hb_015934_040 Hb_003168_110 Hb_003168_110 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120 Hb_015934_040--Hb_010618_010 Hb_000297_010 Hb_000297_010 Hb_015934_040--Hb_000297_010 Hb_000331_670 Hb_000331_670 Hb_015934_040--Hb_000331_670 Hb_015934_040--Hb_010128_080 Hb_001248_060 Hb_001248_060 Hb_015934_040--Hb_001248_060 Hb_000976_410 Hb_000976_410 Hb_000035_320--Hb_000976_410 Hb_000671_050 Hb_000671_050 Hb_000035_320--Hb_000671_050 Hb_148644_010 Hb_148644_010 Hb_000035_320--Hb_148644_010 Hb_002835_080 Hb_002835_080 Hb_000035_320--Hb_002835_080 Hb_004032_150 Hb_004032_150 Hb_000035_320--Hb_004032_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76071 3.76784 1.52236 4.17376 3.24021 4.51432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24649 4.32419 4.28165 3.05325 3.37774

CAGE analysis