Hb_000003_590

Information

Type -
Description -
Location Contig3: 430222-437882
Sequence    

Annotation

kegg
ID vvi:100253221
description uncharacterized LOC100253221
nr
ID XP_012069094.1
description PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
swissprot
ID Q8N752
description Casein kinase I isoform alpha-like OS=Homo sapiens GN=CSNK1A1L PE=2 SV=2
trembl
ID A0A067L0W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24867 PE=3 SV=1
Gene Ontology
ID GO:0004674
description casein kinase i-2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31434: 430067-430259 , PASA_asmbl_31437: 435880-437421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_590 0.0 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
2 Hb_000032_520 0.0646844494 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
3 Hb_002110_190 0.0667375304 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
4 Hb_001377_490 0.0685793526 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
5 Hb_004567_090 0.0687671808 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
6 Hb_001377_510 0.0716164614 - - ormdl, putative [Ricinus communis]
7 Hb_000487_270 0.0742075145 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
8 Hb_000340_530 0.0747279008 - - hypothetical protein VITISV_016664 [Vitis vinifera]
9 Hb_019863_070 0.0793274011 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
10 Hb_000665_100 0.079495526 - - PREDICTED: neurochondrin [Jatropha curcas]
11 Hb_007638_030 0.0795501214 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
12 Hb_022115_020 0.0801724593 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
13 Hb_002026_210 0.0806862407 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
14 Hb_001679_050 0.0812357802 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
15 Hb_007479_040 0.0830474958 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000181_400 0.0832711695 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
17 Hb_000245_040 0.083823011 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
18 Hb_000923_010 0.0839326239 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
19 Hb_005054_090 0.0841050382 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
20 Hb_004990_010 0.0846653087 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000003_590 Hb_000003_590 Hb_000032_520 Hb_000032_520 Hb_000003_590--Hb_000032_520 Hb_002110_190 Hb_002110_190 Hb_000003_590--Hb_002110_190 Hb_001377_490 Hb_001377_490 Hb_000003_590--Hb_001377_490 Hb_004567_090 Hb_004567_090 Hb_000003_590--Hb_004567_090 Hb_001377_510 Hb_001377_510 Hb_000003_590--Hb_001377_510 Hb_000487_270 Hb_000487_270 Hb_000003_590--Hb_000487_270 Hb_015934_040 Hb_015934_040 Hb_000032_520--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000032_520--Hb_001538_130 Hb_000792_010 Hb_000792_010 Hb_000032_520--Hb_000792_010 Hb_019863_070 Hb_019863_070 Hb_000032_520--Hb_019863_070 Hb_010618_010 Hb_010618_010 Hb_000032_520--Hb_010618_010 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_002110_190--Hb_004567_090 Hb_011037_030 Hb_011037_030 Hb_002110_190--Hb_011037_030 Hb_026198_070 Hb_026198_070 Hb_002110_190--Hb_026198_070 Hb_054865_150 Hb_054865_150 Hb_002110_190--Hb_054865_150 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120 Hb_000185_040 Hb_000185_040 Hb_001377_490--Hb_000185_040 Hb_000009_560 Hb_000009_560 Hb_001377_490--Hb_000009_560 Hb_000260_010 Hb_000260_010 Hb_001377_490--Hb_000260_010 Hb_164010_030 Hb_164010_030 Hb_001377_490--Hb_164010_030 Hb_000003_250 Hb_000003_250 Hb_001377_490--Hb_000003_250 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_004567_090--Hb_007479_040 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_004567_090--Hb_054865_150 Hb_000645_090 Hb_000645_090 Hb_001377_510--Hb_000645_090 Hb_022115_020 Hb_022115_020 Hb_001377_510--Hb_022115_020 Hb_007416_090 Hb_007416_090 Hb_001377_510--Hb_007416_090 Hb_001377_510--Hb_002110_190 Hb_007638_030 Hb_007638_030 Hb_001377_510--Hb_007638_030 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_010515_020 Hb_010515_020 Hb_000487_270--Hb_010515_020 Hb_008279_040 Hb_008279_040 Hb_000487_270--Hb_008279_040 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_001679_050 Hb_001679_050 Hb_000487_270--Hb_001679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.17251 9.38807 4.9689 10.8141 8.76336 9.37653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.6212 9.50338 10.0534 8.935 8.65128

CAGE analysis