Hb_000487_270

Information

Type -
Description -
Location Contig487: 245760-248688
Sequence    

Annotation

kegg
ID rcu:RCOM_1576080
description hypothetical protein
nr
ID KDP25116.1
description hypothetical protein JCGZ_22651 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JMA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22651 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45025: 243674-248574 , PASA_asmbl_45026: 245705-246057
cDNA
(Sanger)
(ID:Location)		 013_G15.ab1: 247577-248567 , 043_A05.ab1: 247677-248567

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_270 0.0 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
2 Hb_000574_450 0.053558764 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
3 Hb_004990_010 0.0626272577 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
4 Hb_010515_020 0.06296201 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
5 Hb_008279_040 0.0637715089 - - Rer1 family protein isoform 2 [Theobroma cacao]
6 Hb_000208_280 0.0702579251 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
7 Hb_001679_050 0.0722779342 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
8 Hb_006452_120 0.0729115679 - - PREDICTED: protein FAM188A [Jatropha curcas]
9 Hb_000856_010 0.0732812539 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
10 Hb_029243_030 0.0739674537 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
11 Hb_000260_350 0.0741123946 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000003_590 0.0742075145 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
13 Hb_019863_070 0.0750787115 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
14 Hb_149985_010 0.0755123363 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
15 Hb_012022_040 0.0756610554 - - Protein SIS1, putative [Ricinus communis]
16 Hb_001789_150 0.0766489039 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Jatropha curcas]
17 Hb_005504_050 0.0767716628 - - putative protein [Arabidopsis thaliana]
18 Hb_001473_160 0.0771777674 - - Vesicle-associated membrane protein, putative [Ricinus communis]
19 Hb_005054_110 0.0776420017 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
20 Hb_000359_060 0.0776480494 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000487_270 Hb_000487_270 Hb_000574_450 Hb_000574_450 Hb_000487_270--Hb_000574_450 Hb_004990_010 Hb_004990_010 Hb_000487_270--Hb_004990_010 Hb_010515_020 Hb_010515_020 Hb_000487_270--Hb_010515_020 Hb_008279_040 Hb_008279_040 Hb_000487_270--Hb_008279_040 Hb_000208_280 Hb_000208_280 Hb_000487_270--Hb_000208_280 Hb_001679_050 Hb_001679_050 Hb_000487_270--Hb_001679_050 Hb_029243_030 Hb_029243_030 Hb_000574_450--Hb_029243_030 Hb_149985_010 Hb_149985_010 Hb_000574_450--Hb_149985_010 Hb_000574_450--Hb_010515_020 Hb_006452_120 Hb_006452_120 Hb_000574_450--Hb_006452_120 Hb_001500_140 Hb_001500_140 Hb_000574_450--Hb_001500_140 Hb_000260_350 Hb_000260_350 Hb_004990_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_004990_010--Hb_093458_040 Hb_002989_020 Hb_002989_020 Hb_004990_010--Hb_002989_020 Hb_013399_020 Hb_013399_020 Hb_004990_010--Hb_013399_020 Hb_000948_230 Hb_000948_230 Hb_004990_010--Hb_000948_230 Hb_010515_020--Hb_006452_120 Hb_010515_020--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_010515_020--Hb_011063_050 Hb_010515_020--Hb_029243_030 Hb_002830_010 Hb_002830_010 Hb_010515_020--Hb_002830_010 Hb_001259_050 Hb_001259_050 Hb_008279_040--Hb_001259_050 Hb_003607_130 Hb_003607_130 Hb_008279_040--Hb_003607_130 Hb_008279_040--Hb_010515_020 Hb_008279_040--Hb_001679_050 Hb_002071_070 Hb_002071_070 Hb_008279_040--Hb_002071_070 Hb_000192_080 Hb_000192_080 Hb_000208_280--Hb_000192_080 Hb_012114_100 Hb_012114_100 Hb_000208_280--Hb_012114_100 Hb_000140_350 Hb_000140_350 Hb_000208_280--Hb_000140_350 Hb_000208_280--Hb_001679_050 Hb_000836_280 Hb_000836_280 Hb_000208_280--Hb_000836_280 Hb_001679_050--Hb_002989_020 Hb_001679_050--Hb_011063_050 Hb_000340_530 Hb_000340_530 Hb_001679_050--Hb_000340_530 Hb_001679_050--Hb_004990_010 Hb_001679_050--Hb_000574_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.77485 5.30132 3.55764 7.55788 3.34003 4.52673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17944 5.41302 5.28486 4.24975 5.3432

CAGE analysis