Hb_003607_130

Information

Type -
Description -
Location Contig3607: 121336-130938
Sequence    

Annotation

kegg
ID rcu:RCOM_1721360
description serine/threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002521124.1
description serine/threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9FPR3
description Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana GN=EDR1 PE=1 SV=1
trembl
ID B9S555
description Serine/threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1721360 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37166: 121596-121991 , PASA_asmbl_37167: 122994-123435 , PASA_asmbl_37168: 123490-124109 , PASA_asmbl_37170: 125181-126056 , PASA_asmbl_37171: 127502-128245 , PASA_asmbl_37172: 128346-130945
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003607_130 0.0 - - serine/threonine protein kinase, putative [Ricinus communis]
2 Hb_008279_040 0.0594013757 - - Rer1 family protein isoform 2 [Theobroma cacao]
3 Hb_001259_050 0.0626428235 - - calcium lipid binding protein, putative [Ricinus communis]
4 Hb_000173_470 0.074908273 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
5 Hb_005245_100 0.0761252715 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic-like [Jatropha curcas]
6 Hb_001717_010 0.0807875175 - - F-box and wd40 domain protein, putative [Ricinus communis]
7 Hb_020178_040 0.0811683649 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000029_060 0.081505721 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
9 Hb_000567_230 0.083306273 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
10 Hb_000347_250 0.0837901312 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
11 Hb_002272_030 0.0850331707 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
12 Hb_000069_310 0.0857321778 - - ubiquitin ligase [Cucumis melo subsp. melo]
13 Hb_005162_090 0.0869131748 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
14 Hb_000487_270 0.0869499135 - - hypothetical protein JCGZ_22651 [Jatropha curcas]
15 Hb_019863_070 0.0879021312 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
16 Hb_001723_100 0.0892702961 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
17 Hb_007017_040 0.0898976578 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
18 Hb_000856_010 0.0902244771 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
19 Hb_000359_060 0.0913882881 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
20 Hb_000925_130 0.0919314252 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003607_130 Hb_003607_130 Hb_008279_040 Hb_008279_040 Hb_003607_130--Hb_008279_040 Hb_001259_050 Hb_001259_050 Hb_003607_130--Hb_001259_050 Hb_000173_470 Hb_000173_470 Hb_003607_130--Hb_000173_470 Hb_005245_100 Hb_005245_100 Hb_003607_130--Hb_005245_100 Hb_001717_010 Hb_001717_010 Hb_003607_130--Hb_001717_010 Hb_020178_040 Hb_020178_040 Hb_003607_130--Hb_020178_040 Hb_008279_040--Hb_001259_050 Hb_000487_270 Hb_000487_270 Hb_008279_040--Hb_000487_270 Hb_010515_020 Hb_010515_020 Hb_008279_040--Hb_010515_020 Hb_001679_050 Hb_001679_050 Hb_008279_040--Hb_001679_050 Hb_002071_070 Hb_002071_070 Hb_008279_040--Hb_002071_070 Hb_000029_060 Hb_000029_060 Hb_001259_050--Hb_000029_060 Hb_033006_030 Hb_033006_030 Hb_001259_050--Hb_033006_030 Hb_000347_250 Hb_000347_250 Hb_001259_050--Hb_000347_250 Hb_000567_230 Hb_000567_230 Hb_001259_050--Hb_000567_230 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_023771_010 Hb_023771_010 Hb_000173_470--Hb_023771_010 Hb_000890_150 Hb_000890_150 Hb_000173_470--Hb_000890_150 Hb_005245_100--Hb_001717_010 Hb_000925_130 Hb_000925_130 Hb_005245_100--Hb_000925_130 Hb_000088_170 Hb_000088_170 Hb_005245_100--Hb_000088_170 Hb_000069_310 Hb_000069_310 Hb_005245_100--Hb_000069_310 Hb_062226_130 Hb_062226_130 Hb_005245_100--Hb_062226_130 Hb_001717_010--Hb_000029_060 Hb_026048_110 Hb_026048_110 Hb_001717_010--Hb_026048_110 Hb_000329_230 Hb_000329_230 Hb_001717_010--Hb_000329_230 Hb_004916_010 Hb_004916_010 Hb_001717_010--Hb_004916_010 Hb_002272_030 Hb_002272_030 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_001723_100 Hb_001723_100 Hb_020178_040--Hb_001723_100 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.20374 7.22644 4.64806 7.43693 3.88534 2.65809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.79205 6.2647 6.80498 4.13963 5.9968

CAGE analysis