Hb_033006_030

Information

Type -
Description -
Location Contig33006: 31057-32525
Sequence    

Annotation

kegg
ID rcu:RCOM_0399790
description hypothetical protein
nr
ID XP_012072564.1
description PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
swissprot
ID Q9LM55
description F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana GN=At1g22040 PE=2 SV=1
trembl
ID A0A067KNW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05355 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34711: 30867-33239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033006_030 0.0 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
2 Hb_001247_250 0.0445349807 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
3 Hb_000172_430 0.0713417779 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000025_730 0.0730726219 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
5 Hb_002073_200 0.0731588929 - - Phosphatase 2A-2 [Theobroma cacao]
6 Hb_003428_010 0.073528555 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
7 Hb_001902_030 0.0739404362 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
8 Hb_001259_050 0.0744744076 - - calcium lipid binding protein, putative [Ricinus communis]
9 Hb_003849_110 0.076754477 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
10 Hb_013358_040 0.0792275534 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
11 Hb_009911_030 0.0806992625 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
12 Hb_008221_180 0.0810521278 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
13 Hb_000454_130 0.081933208 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
14 Hb_000049_260 0.0831997964 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_000201_100 0.0836003532 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
16 Hb_007894_110 0.0838922289 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
17 Hb_004208_030 0.0840659849 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
18 Hb_003494_020 0.0841956102 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
19 Hb_138585_090 0.0843425449 - - Long chain base2 isoform 2 [Theobroma cacao]
20 Hb_002234_170 0.0843993026 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_033006_030 Hb_033006_030 Hb_001247_250 Hb_001247_250 Hb_033006_030--Hb_001247_250 Hb_000172_430 Hb_000172_430 Hb_033006_030--Hb_000172_430 Hb_000025_730 Hb_000025_730 Hb_033006_030--Hb_000025_730 Hb_002073_200 Hb_002073_200 Hb_033006_030--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_033006_030--Hb_003428_010 Hb_001902_030 Hb_001902_030 Hb_033006_030--Hb_001902_030 Hb_001247_250--Hb_000172_430 Hb_000201_100 Hb_000201_100 Hb_001247_250--Hb_000201_100 Hb_004208_030 Hb_004208_030 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_001247_250--Hb_002073_200 Hb_009911_030 Hb_009911_030 Hb_000172_430--Hb_009911_030 Hb_162275_050 Hb_162275_050 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_000025_730--Hb_162275_050 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_164010_040 Hb_164010_040 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_002263_020 Hb_002263_020 Hb_001902_030--Hb_002263_020 Hb_005291_050 Hb_005291_050 Hb_001902_030--Hb_005291_050 Hb_007657_010 Hb_007657_010 Hb_001902_030--Hb_007657_010 Hb_000331_260 Hb_000331_260 Hb_001902_030--Hb_000331_260 Hb_008847_030 Hb_008847_030 Hb_001902_030--Hb_008847_030 Hb_004109_080 Hb_004109_080 Hb_001902_030--Hb_004109_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4876 17.7815 14.0849 13.4694 14.5183 13.2405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.75036 19.8672 15.9754 9.40444 17.6796

CAGE analysis