Hb_162275_050

Information

Type -
Description -
Location Contig162275: 31827-44336
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11810g
description hypothetical protein
nr
ID XP_012087918.1
description PREDICTED: mRNA-capping enzyme [Jatropha curcas]
swissprot
ID O55236
description mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1
trembl
ID A0A067JNU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25057 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mrna-capping enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14665: 31921-44142 , PASA_asmbl_14666: 44188-44292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162275_050 0.0 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
2 Hb_012779_090 0.0300102568 - - PREDICTED: lipase member N [Jatropha curcas]
3 Hb_012194_030 0.0475172942 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_000614_210 0.0562964752 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
5 Hb_001410_020 0.0565147601 - - cdk8, putative [Ricinus communis]
6 Hb_003835_070 0.0595302748 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
7 Hb_003464_090 0.0609355576 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
8 Hb_000172_430 0.0616288167 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002798_070 0.0623319674 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
10 Hb_000395_130 0.0647164373 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
11 Hb_001195_530 0.0656542903 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000258_160 0.0664848792 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002217_170 0.0680984336 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
14 Hb_003206_130 0.0685357253 - - PREDICTED: protein NRDE2 homolog [Jatropha curcas]
15 Hb_001089_050 0.0685423003 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
16 Hb_000025_730 0.0687068514 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
17 Hb_000441_120 0.0687069083 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003030_060 0.069606817 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
19 Hb_001408_140 0.0712841763 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
20 Hb_007163_120 0.0717235187 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_162275_050 Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_162275_050--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_001410_020 Hb_001410_020 Hb_162275_050--Hb_001410_020 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_003464_090 Hb_003464_090 Hb_162275_050--Hb_003464_090 Hb_002798_070 Hb_002798_070 Hb_012779_090--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_012779_090--Hb_000243_250 Hb_012779_090--Hb_012194_030 Hb_000395_130 Hb_000395_130 Hb_012779_090--Hb_000395_130 Hb_012779_090--Hb_001410_020 Hb_000329_370 Hb_000329_370 Hb_012194_030--Hb_000329_370 Hb_002085_030 Hb_002085_030 Hb_012194_030--Hb_002085_030 Hb_012194_030--Hb_003835_070 Hb_010712_050 Hb_010712_050 Hb_012194_030--Hb_010712_050 Hb_159558_010 Hb_159558_010 Hb_000614_210--Hb_159558_010 Hb_002205_250 Hb_002205_250 Hb_000614_210--Hb_002205_250 Hb_000614_210--Hb_003835_070 Hb_001814_030 Hb_001814_030 Hb_000614_210--Hb_001814_030 Hb_105105_010 Hb_105105_010 Hb_000614_210--Hb_105105_010 Hb_000260_180 Hb_000260_180 Hb_001410_020--Hb_000260_180 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_006588_210 Hb_006588_210 Hb_001410_020--Hb_006588_210 Hb_000025_730 Hb_000025_730 Hb_001410_020--Hb_000025_730 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_003835_070--Hb_105105_010 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.10852 16.433 10.1291 7.77201 12.0436 9.14599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06668 10.8479 9.90191 10.5818 9.59643

CAGE analysis