Hb_000025_730

Information

Type -
Description -
Location Contig25: 697954-700447
Sequence    

Annotation

kegg
ID rcu:RCOM_0819460
description mitochondrial 60S ribosomal protein L2, putative
nr
ID XP_012082297.1
description PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
swissprot
ID P93311
description 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1
trembl
ID A0A067KB80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16468 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26171: 698044-700388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_730 0.0 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
2 Hb_002073_200 0.0607868969 - - Phosphatase 2A-2 [Theobroma cacao]
3 Hb_024621_040 0.0641402417 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
4 Hb_003849_110 0.0660162112 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
5 Hb_000172_430 0.0670063242 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000069_310 0.0677997325 - - ubiquitin ligase [Cucumis melo subsp. melo]
7 Hb_162275_050 0.0687068514 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
8 Hb_001195_530 0.0695132566 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000803_070 0.0703019939 - - PREDICTED: protein TRAUCO [Jatropha curcas]
10 Hb_030827_020 0.0704134304 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
11 Hb_007894_110 0.0705797378 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
12 Hb_003464_090 0.07088953 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
13 Hb_000861_080 0.0710306857 - - PREDICTED: protein ELC-like [Jatropha curcas]
14 Hb_001279_120 0.0710349547 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
15 Hb_001410_020 0.0710915454 - - cdk8, putative [Ricinus communis]
16 Hb_004916_010 0.0720601682 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
17 Hb_033006_030 0.0730726219 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
18 Hb_002818_030 0.0741770238 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_000866_460 0.0773207862 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
20 Hb_004208_030 0.0773954266 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000025_730 Hb_000025_730 Hb_002073_200 Hb_002073_200 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_164010_040 Hb_164010_040 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_007163_120 Hb_007163_120 Hb_024621_040--Hb_007163_120 Hb_003464_090 Hb_003464_090 Hb_024621_040--Hb_003464_090 Hb_002028_210 Hb_002028_210 Hb_024621_040--Hb_002028_210 Hb_007894_110 Hb_007894_110 Hb_024621_040--Hb_007894_110 Hb_001195_530 Hb_001195_530 Hb_024621_040--Hb_001195_530 Hb_003849_110--Hb_003464_090 Hb_003428_010 Hb_003428_010 Hb_003849_110--Hb_003428_010 Hb_019863_070 Hb_019863_070 Hb_003849_110--Hb_019863_070 Hb_000029_060 Hb_000029_060 Hb_003849_110--Hb_000029_060 Hb_004916_010 Hb_004916_010 Hb_003849_110--Hb_004916_010 Hb_002818_030 Hb_002818_030 Hb_003849_110--Hb_002818_030 Hb_001247_250 Hb_001247_250 Hb_000172_430--Hb_001247_250 Hb_009911_030 Hb_009911_030 Hb_000172_430--Hb_009911_030 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_000069_310--Hb_013358_040 Hb_000069_310--Hb_003849_110 Hb_000915_180 Hb_000915_180 Hb_000069_310--Hb_000915_180 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000331_680 Hb_000331_680 Hb_000069_310--Hb_000331_680 Hb_162275_050--Hb_012779_090 Hb_162275_050--Hb_012194_030 Hb_000614_210 Hb_000614_210 Hb_162275_050--Hb_000614_210 Hb_001410_020 Hb_001410_020 Hb_162275_050--Hb_001410_020 Hb_003835_070 Hb_003835_070 Hb_162275_050--Hb_003835_070 Hb_162275_050--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2357 23.2763 16.8679 15.021 15.2379 10.7333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3372 16.1214 17.5501 11.9389 15.5454

CAGE analysis