Hb_001247_250

Information

Type -
Description -
Location Contig1247: 173404-174240
Sequence    

Annotation

kegg
ID rcu:RCOM_1436640
description DNA binding protein, putative
nr
ID XP_012088829.1
description PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07498: 172987-174195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_250 0.0 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
2 Hb_033006_030 0.0445349807 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
3 Hb_000172_430 0.0545232069 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000201_100 0.0616840793 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
5 Hb_004208_030 0.0672109124 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_002234_170 0.0781954123 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
7 Hb_002073_200 0.0787021701 - - Phosphatase 2A-2 [Theobroma cacao]
8 Hb_000025_730 0.0810686158 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
9 Hb_002035_120 0.0811233552 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14330 [Jatropha curcas]
10 Hb_009911_030 0.0826570364 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
11 Hb_002783_040 0.0834208843 transcription factor TF Family: IWS1 -
12 Hb_008221_180 0.0842512902 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
13 Hb_000061_030 0.0844785228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
14 Hb_013358_040 0.084661285 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
15 Hb_000049_260 0.0850876261 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_007007_120 0.0854734304 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
17 Hb_003929_280 0.0864141093 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
18 Hb_002818_030 0.0864720036 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
19 Hb_003849_110 0.0873510707 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
20 Hb_003428_010 0.087727152 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001247_250 Hb_001247_250 Hb_033006_030 Hb_033006_030 Hb_001247_250--Hb_033006_030 Hb_000172_430 Hb_000172_430 Hb_001247_250--Hb_000172_430 Hb_000201_100 Hb_000201_100 Hb_001247_250--Hb_000201_100 Hb_004208_030 Hb_004208_030 Hb_001247_250--Hb_004208_030 Hb_002234_170 Hb_002234_170 Hb_001247_250--Hb_002234_170 Hb_002073_200 Hb_002073_200 Hb_001247_250--Hb_002073_200 Hb_033006_030--Hb_000172_430 Hb_000025_730 Hb_000025_730 Hb_033006_030--Hb_000025_730 Hb_033006_030--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_033006_030--Hb_003428_010 Hb_001902_030 Hb_001902_030 Hb_033006_030--Hb_001902_030 Hb_009911_030 Hb_009911_030 Hb_000172_430--Hb_009911_030 Hb_162275_050 Hb_162275_050 Hb_000172_430--Hb_162275_050 Hb_012779_090 Hb_012779_090 Hb_000172_430--Hb_012779_090 Hb_012194_030 Hb_012194_030 Hb_000172_430--Hb_012194_030 Hb_001838_060 Hb_001838_060 Hb_000172_430--Hb_001838_060 Hb_027295_050 Hb_027295_050 Hb_000201_100--Hb_027295_050 Hb_000201_100--Hb_000172_430 Hb_000165_250 Hb_000165_250 Hb_000201_100--Hb_000165_250 Hb_000029_050 Hb_000029_050 Hb_000201_100--Hb_000029_050 Hb_000289_060 Hb_000289_060 Hb_000201_100--Hb_000289_060 Hb_013358_040 Hb_013358_040 Hb_004208_030--Hb_013358_040 Hb_002754_010 Hb_002754_010 Hb_004208_030--Hb_002754_010 Hb_004208_030--Hb_002073_200 Hb_004208_030--Hb_000172_430 Hb_002110_150 Hb_002110_150 Hb_004208_030--Hb_002110_150 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002783_040 Hb_002783_040 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_002073_200--Hb_013358_040 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_164010_040 Hb_164010_040 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.6706 8.28537 6.47866 4.71797 5.54841 6.52442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.32373 8.04986 7.99098 3.67772 7.35883

CAGE analysis