Hb_002754_010

Information

Type -
Description -
Location Contig2754: 46530-53178
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15610g
description POPTRDRAFT_1097722; hypothetical protein
nr
ID XP_012077797.1
description PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LB29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17278 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28835: 46533-53194 , PASA_asmbl_28837: 49077-49328
cDNA
(Sanger)
(ID:Location)		 047_H10.ab1: 52026-53194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002754_010 0.0 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
2 Hb_164010_040 0.0530231897 - - serine/threonine protein kinase, putative [Ricinus communis]
3 Hb_000331_550 0.0589623097 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
4 Hb_000926_090 0.0621512538 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
5 Hb_065525_040 0.0623841675 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
6 Hb_013358_040 0.0645714474 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
7 Hb_001300_150 0.0661446999 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
8 Hb_000300_500 0.0672514377 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
9 Hb_004208_030 0.0690906825 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
10 Hb_006455_120 0.0702836838 - - n6-DNA-methyltransferase, putative [Ricinus communis]
11 Hb_001473_160 0.0720496402 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_000465_160 0.0731081694 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
13 Hb_000869_080 0.0742174041 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
14 Hb_027380_130 0.0756380756 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
15 Hb_000069_310 0.0765961865 - - ubiquitin ligase [Cucumis melo subsp. melo]
16 Hb_000925_130 0.0772569855 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
17 Hb_000375_350 0.0772802145 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
18 Hb_001511_060 0.0776876106 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
19 Hb_004162_130 0.0776950034 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000331_670 0.0777079449 - - PREDICTED: protein tipD [Jatropha curcas]

Gene co-expression network

sample Hb_002754_010 Hb_002754_010 Hb_164010_040 Hb_164010_040 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150 Hb_000869_080 Hb_000869_080 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_164010_040--Hb_013358_040 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_002073_200 Hb_002073_200 Hb_164010_040--Hb_002073_200 Hb_001163_050 Hb_001163_050 Hb_000331_550--Hb_001163_050 Hb_000373_070 Hb_000373_070 Hb_000331_550--Hb_000373_070 Hb_156279_020 Hb_156279_020 Hb_000331_550--Hb_156279_020 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_022256_020 Hb_022256_020 Hb_000926_090--Hb_022256_020 Hb_007317_010 Hb_007317_010 Hb_000926_090--Hb_007317_010 Hb_000484_130 Hb_000484_130 Hb_000926_090--Hb_000484_130 Hb_000926_090--Hb_164010_040 Hb_022250_060 Hb_022250_060 Hb_000926_090--Hb_022250_060 Hb_000732_010 Hb_000732_010 Hb_065525_040--Hb_000732_010 Hb_005054_110 Hb_005054_110 Hb_065525_040--Hb_005054_110 Hb_065525_040--Hb_000331_550 Hb_005463_100 Hb_005463_100 Hb_065525_040--Hb_005463_100 Hb_000069_310 Hb_000069_310 Hb_065525_040--Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_013358_040--Hb_000869_080 Hb_000465_160 Hb_000465_160 Hb_001300_150--Hb_000465_160 Hb_000375_350 Hb_000375_350 Hb_001300_150--Hb_000375_350 Hb_000599_250 Hb_000599_250 Hb_001300_150--Hb_000599_250 Hb_003582_060 Hb_003582_060 Hb_001300_150--Hb_003582_060 Hb_027380_130 Hb_027380_130 Hb_001300_150--Hb_027380_130 Hb_000260_030 Hb_000260_030 Hb_001300_150--Hb_000260_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53427 8.80033 9.014 10.2024 6.26475 7.74256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.89943 10.9716 12.2414 6.42321 6.52468

CAGE analysis