Hb_022250_060

Information

Type -
Description -
Location Contig22250: 40490-44960
Sequence    

Annotation

kegg
ID rcu:RCOM_1503150
description Succinate/fumarate mitochondrial transporter, putative
nr
ID XP_012090554.1
description PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
swissprot
ID Q5XHA0
description Calcium-binding mitochondrial carrier protein SCaMC-1 OS=Xenopus tropicalis GN=slc25a24 PE=2 SV=1
trembl
ID E6NU02
description JHL07K02.2 protein OS=Jatropha curcas GN=JHL07K02.2 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-binding mitochondrial carrier protein s -1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23031: 40583-40805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022250_060 0.0 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
2 Hb_007317_010 0.0525013925 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000221_190 0.0674459236 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
4 Hb_000926_090 0.0752038788 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
5 Hb_004162_130 0.0777531541 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002217_020 0.0801161451 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
7 Hb_000393_020 0.0811449546 - - lipid binding protein, putative [Ricinus communis]
8 Hb_164010_040 0.0815974423 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_010578_080 0.0817918573 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
10 Hb_000733_200 0.0822157376 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
11 Hb_003304_020 0.0824396924 - - Polyadenylate-binding protein RBP47C [Glycine soja]
12 Hb_003582_060 0.0862638691 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
13 Hb_000928_070 0.0865127452 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_001300_150 0.0866810751 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
15 Hb_062226_130 0.0881979052 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
16 Hb_001314_070 0.089301688 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005765_050 0.0895719883 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
18 Hb_000505_130 0.0906198744 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
19 Hb_006615_240 0.0908028595 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
20 Hb_020025_040 0.0912827257 - - sodium-bile acid cotransporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_022250_060 Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_022250_060--Hb_007317_010 Hb_000221_190 Hb_000221_190 Hb_022250_060--Hb_000221_190 Hb_000926_090 Hb_000926_090 Hb_022250_060--Hb_000926_090 Hb_004162_130 Hb_004162_130 Hb_022250_060--Hb_004162_130 Hb_002217_020 Hb_002217_020 Hb_022250_060--Hb_002217_020 Hb_000393_020 Hb_000393_020 Hb_022250_060--Hb_000393_020 Hb_007317_010--Hb_000926_090 Hb_007317_010--Hb_002217_020 Hb_007317_010--Hb_000221_190 Hb_010578_080 Hb_010578_080 Hb_007317_010--Hb_010578_080 Hb_002754_010 Hb_002754_010 Hb_007317_010--Hb_002754_010 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_000926_090--Hb_002754_010 Hb_022256_020 Hb_022256_020 Hb_000926_090--Hb_022256_020 Hb_000484_130 Hb_000484_130 Hb_000926_090--Hb_000484_130 Hb_164010_040 Hb_164010_040 Hb_000926_090--Hb_164010_040 Hb_000375_350 Hb_000375_350 Hb_004162_130--Hb_000375_350 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_004162_130--Hb_003728_060 Hb_000733_200 Hb_000733_200 Hb_004162_130--Hb_000733_200 Hb_011519_010 Hb_011519_010 Hb_004162_130--Hb_011519_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_001856_200 Hb_001856_200 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020 Hb_004117_260 Hb_004117_260 Hb_000393_020--Hb_004117_260 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_001314_070 Hb_001314_070 Hb_000393_020--Hb_001314_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29513 1.99826 2.59063 2.22039 0.839195 1.43887
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94536 2.93389 2.97058 1.781 1.41915

CAGE analysis