Hb_000349_260

Information

Type -
Description -
Location Contig349: 261441-268157
Sequence    

Annotation

kegg
ID rcu:RCOM_1681440
description hypothetical protein
nr
ID XP_012087064.1
description PREDICTED: transmembrane protein 64 [Jatropha curcas]
swissprot
ID Q55909
description TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1
trembl
ID A0A067JNL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36324: 261463-267790 , PASA_asmbl_36325: 262057-262900
cDNA
(Sanger)
(ID:Location)		 039_F10.ab1: 261464-261752

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_260 0.0 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
2 Hb_000260_350 0.0486061273 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000637_110 0.0518695598 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
4 Hb_000088_170 0.060486157 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
5 Hb_001511_060 0.061302458 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
6 Hb_000392_420 0.0630456498 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
7 Hb_001473_160 0.0651374967 - - Vesicle-associated membrane protein, putative [Ricinus communis]
8 Hb_093458_040 0.0651945978 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
9 Hb_019181_040 0.0667088912 - - component of oligomeric golgi complex, putative [Ricinus communis]
10 Hb_004990_010 0.0681348381 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
11 Hb_000393_020 0.0682924217 - - lipid binding protein, putative [Ricinus communis]
12 Hb_000359_060 0.0685274613 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
13 Hb_000778_010 0.0689557146 - - hypothetical protein [Bacillus subtilis]
14 Hb_013575_010 0.0697362825 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
15 Hb_002007_080 0.0708802401 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
16 Hb_005054_110 0.0708824459 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
17 Hb_149985_010 0.0712777491 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
18 Hb_003428_010 0.0721248948 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
19 Hb_000925_130 0.0727480625 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
20 Hb_000046_500 0.0729855426 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]

Gene co-expression network

sample Hb_000349_260 Hb_000349_260 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_000260_350--Hb_001511_060 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_005137_040 Hb_005137_040 Hb_000637_110--Hb_005137_040 Hb_000637_110--Hb_001473_160 Hb_000637_110--Hb_000088_170 Hb_000300_500 Hb_000300_500 Hb_000637_110--Hb_000300_500 Hb_006455_120 Hb_006455_120 Hb_000637_110--Hb_006455_120 Hb_000088_170--Hb_005137_040 Hb_000088_170--Hb_001473_160 Hb_000856_040 Hb_000856_040 Hb_000088_170--Hb_000856_040 Hb_001408_140 Hb_001408_140 Hb_000088_170--Hb_001408_140 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230 Hb_000778_010 Hb_000778_010 Hb_000392_420--Hb_000778_010 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_002007_080 Hb_002007_080 Hb_000392_420--Hb_002007_080 Hb_164390_010 Hb_164390_010 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_000392_420--Hb_093458_040 Hb_000072_120 Hb_000072_120 Hb_001473_160--Hb_000072_120 Hb_000329_230 Hb_000329_230 Hb_001473_160--Hb_000329_230 Hb_002028_210 Hb_002028_210 Hb_001473_160--Hb_002028_210 Hb_003906_200 Hb_003906_200 Hb_001473_160--Hb_003906_200 Hb_001473_160--Hb_093458_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.70048 4.63293 5.74319 6.89515 4.13101 4.12951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.60093 5.07705 6.85482 5.08252 4.97435

CAGE analysis