Hb_002007_080

Information

Type -
Description -
Location Contig2007: 38853-47499
Sequence    

Annotation

kegg
ID rcu:RCOM_1432720
description acyl-CoA binding protein, putative
nr
ID XP_012089029.1
description PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
swissprot
ID Q9MA55
description Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1
trembl
ID A0A067JVC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23327 PE=4 SV=1
Gene Ontology
ID GO:0000062
description acyl- -binding domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_080 0.0 - - PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Jatropha curcas]
2 Hb_000392_420 0.0587386639 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
3 Hb_000778_010 0.0661480648 - - hypothetical protein [Bacillus subtilis]
4 Hb_007894_150 0.0662443583 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
5 Hb_164390_010 0.0685901136 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
6 Hb_000349_260 0.0708802401 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
7 Hb_000173_280 0.0715175777 - - Speckle-type POZ protein, putative [Ricinus communis]
8 Hb_003228_110 0.0723171838 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
9 Hb_000460_030 0.0744294478 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
10 Hb_001876_050 0.0745091951 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
11 Hb_000853_150 0.076055066 - - Fumarase 1 isoform 2 [Theobroma cacao]
12 Hb_001408_140 0.0781424931 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
13 Hb_003861_060 0.078882275 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_010578_080 0.0792271486 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA16-like [Populus euphratica]
15 Hb_003428_010 0.0793425282 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
16 Hb_000663_060 0.0794317997 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
17 Hb_001359_050 0.0806096047 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001123_040 0.0813721431 - - PREDICTED: R3H domain-containing protein 1-like [Jatropha curcas]
19 Hb_005634_010 0.0824438316 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_010422_010 0.082544645 - - phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002007_080 Hb_002007_080 Hb_000392_420 Hb_000392_420 Hb_002007_080--Hb_000392_420 Hb_000778_010 Hb_000778_010 Hb_002007_080--Hb_000778_010 Hb_007894_150 Hb_007894_150 Hb_002007_080--Hb_007894_150 Hb_164390_010 Hb_164390_010 Hb_002007_080--Hb_164390_010 Hb_000349_260 Hb_000349_260 Hb_002007_080--Hb_000349_260 Hb_000173_280 Hb_000173_280 Hb_002007_080--Hb_000173_280 Hb_000392_420--Hb_000778_010 Hb_003861_060 Hb_003861_060 Hb_000392_420--Hb_003861_060 Hb_000392_420--Hb_164390_010 Hb_003058_120 Hb_003058_120 Hb_000392_420--Hb_003058_120 Hb_093458_040 Hb_093458_040 Hb_000392_420--Hb_093458_040 Hb_000663_060 Hb_000663_060 Hb_000778_010--Hb_000663_060 Hb_000365_230 Hb_000365_230 Hb_000778_010--Hb_000365_230 Hb_000778_010--Hb_164390_010 Hb_007472_070 Hb_007472_070 Hb_000778_010--Hb_007472_070 Hb_000778_010--Hb_000173_280 Hb_004109_320 Hb_004109_320 Hb_007894_150--Hb_004109_320 Hb_007894_150--Hb_164390_010 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_164390_010--Hb_000365_230 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_164390_010--Hb_004109_320 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_001359_050 Hb_001359_050 Hb_000173_280--Hb_001359_050 Hb_000173_280--Hb_164390_010 Hb_006570_080 Hb_006570_080 Hb_000173_280--Hb_006570_080 Hb_005588_060 Hb_005588_060 Hb_000173_280--Hb_005588_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.93655 9.52415 13.137 10.1219 7.9258 7.25786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.88503 11.4271 12.7483 14.2158 10.0369

CAGE analysis