Hb_001511_060

Information

Type -
Description -
Location Contig1511: 104429-110386
Sequence    

Annotation

kegg
ID rcu:RCOM_0839750
description sorting and assembly machinery (sam50) protein, putative
nr
ID XP_012086970.1
description PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
swissprot
ID Q6P806
description Sorting and assembly machinery component 50 homolog OS=Xenopus tropicalis GN=samm50 PE=2 SV=1
trembl
ID A0A067LKA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01224 PE=4 SV=1
Gene Ontology
ID GO:0005634
description outer membrane omp85 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12761: 104476-110302 , PASA_asmbl_12762: 109274-109619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_060 0.0 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
2 Hb_000260_350 0.0485952643 - - conserved hypothetical protein [Ricinus communis]
3 Hb_168978_010 0.0542931492 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
4 Hb_022115_020 0.0587496734 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
5 Hb_000349_260 0.061302458 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
6 Hb_000359_060 0.0618198533 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
7 Hb_003994_230 0.0645216276 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
8 Hb_004109_220 0.0653113312 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
9 Hb_093458_040 0.0657481573 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
10 Hb_001278_100 0.0658934725 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
11 Hb_000948_230 0.0660638617 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_002681_100 0.0664651799 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
13 Hb_000331_550 0.0668841391 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
14 Hb_000580_180 0.0700892883 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004990_010 0.0706596291 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
16 Hb_149985_010 0.0707349401 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
17 Hb_021419_030 0.0713626855 - - hypothetical protein glysoja_023295 [Glycine soja]
18 Hb_000173_280 0.0714243383 - - Speckle-type POZ protein, putative [Ricinus communis]
19 Hb_013575_010 0.0723633294 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
20 Hb_000300_500 0.0734245345 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]

Gene co-expression network

sample Hb_001511_060 Hb_001511_060 Hb_000260_350 Hb_000260_350 Hb_001511_060--Hb_000260_350 Hb_168978_010 Hb_168978_010 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_000359_060 Hb_000359_060 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_000260_350--Hb_168978_010 Hb_168978_010--Hb_000359_060 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030 Hb_155159_020 Hb_155159_020 Hb_022115_020--Hb_155159_020 Hb_002110_190 Hb_002110_190 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_000028_180 Hb_000028_180 Hb_022115_020--Hb_000028_180 Hb_000603_150 Hb_000603_150 Hb_022115_020--Hb_000603_150 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_000359_060--Hb_149985_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8296 12.4163 13.4929 19.3333 14.043 11.1483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1422 18.8572 18.0964 15.2813 11.1078

CAGE analysis