Hb_000359_060

Information

Type -
Description -
Location Contig359: 85260-93224
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22820g
description POPTRDRAFT_559520; hypothetical protein
nr
ID XP_012081590.1
description PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
swissprot
ID Q28D01
description WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2
trembl
ID A0A067K451
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19323 PE=4 SV=1
Gene Ontology
ID GO:0005515
description wd repeat-containing protein 26-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37030: 85265-93228 , PASA_asmbl_37031: 86645-86965 , PASA_asmbl_37032: 88156-88383 , PASA_asmbl_37033: 88775-89182
cDNA
(Sanger)
(ID:Location)		 008_E21.ab1: 90647-93158 , 012_L22.ab1: 90714-93228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_060 0.0 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
2 Hb_000890_150 0.0394055912 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
3 Hb_000220_100 0.047535757 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
4 Hb_011218_090 0.0526469029 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
5 Hb_149985_010 0.0536770021 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
6 Hb_168978_010 0.0556684501 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
7 Hb_000173_410 0.0599547421 - - PREDICTED: BI1-like protein [Jatropha curcas]
8 Hb_004078_040 0.0602941983 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
9 Hb_033594_080 0.060922179 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
10 Hb_001511_060 0.0618198533 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
11 Hb_004109_220 0.0618902821 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
12 Hb_012022_040 0.0672110003 - - Protein SIS1, putative [Ricinus communis]
13 Hb_000349_260 0.0685274613 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
14 Hb_000049_210 0.0689812663 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
15 Hb_000260_350 0.069774223 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000856_010 0.06991754 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
17 Hb_004108_220 0.0718182556 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
18 Hb_000393_020 0.0737823177 - - lipid binding protein, putative [Ricinus communis]
19 Hb_000454_090 0.0762609763 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
20 Hb_000487_270 0.0776480494 - - hypothetical protein JCGZ_22651 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_060 Hb_000359_060 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_149985_010 Hb_149985_010 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_000220_100--Hb_000173_410 Hb_002045_070 Hb_002045_070 Hb_000220_100--Hb_002045_070 Hb_000608_050 Hb_000608_050 Hb_000220_100--Hb_000608_050 Hb_000454_090 Hb_000454_090 Hb_000220_100--Hb_000454_090 Hb_000220_100--Hb_033594_080 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140 Hb_004109_220 Hb_004109_220 Hb_149985_010--Hb_004109_220 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_149985_010--Hb_000049_210 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030 Hb_000173_410--Hb_000454_090 Hb_000252_100 Hb_000252_100 Hb_000173_410--Hb_000252_100 Hb_005765_050 Hb_005765_050 Hb_000173_410--Hb_005765_050 Hb_000173_410--Hb_004078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.024 23.5327 21.213 38.5398 17.1872 15.5169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.7512 30.7755 32.3108 25.6867 21.0494

CAGE analysis