Hb_000608_050

Information

Type -
Description -
Location Contig608: 15370-19429
Sequence    

Annotation

kegg
ID rcu:RCOM_1078580
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085753.1
description PREDICTED: GDT1-like protein 4 [Jatropha curcas]
swissprot
ID Q93Y38
description GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1
trembl
ID A0A067JSK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18020 PE=4 SV=1
Gene Ontology
ID GO:0005794
description gdt1-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50813: 12213-14723 , PASA_asmbl_50814: 15532-19373 , PASA_asmbl_50815: 18641-19121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_050 0.0 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
2 Hb_005765_050 0.0635108913 - - PREDICTED: dnaJ homolog subfamily B member 4-like [Populus euphratica]
3 Hb_000220_100 0.0692346145 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
4 Hb_148121_040 0.0711856533 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
5 Hb_000086_140 0.0740158561 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
6 Hb_000805_240 0.0746908947 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
7 Hb_004078_040 0.0788776671 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
8 Hb_002681_200 0.0791638369 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
9 Hb_000173_410 0.0827865149 - - PREDICTED: BI1-like protein [Jatropha curcas]
10 Hb_000733_200 0.0842969071 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
11 Hb_001300_150 0.0847852878 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
12 Hb_017895_040 0.0856493801 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
13 Hb_000359_060 0.0869435845 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
14 Hb_004108_220 0.0900792988 - - PREDICTED: mRNA-capping enzyme-like isoform X1 [Jatropha curcas]
15 Hb_002045_070 0.0908639022 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
16 Hb_000849_130 0.0914826356 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
17 Hb_033594_080 0.0920890182 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
18 Hb_005054_080 0.0923045679 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
19 Hb_000221_190 0.0925479202 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
20 Hb_154948_040 0.0927422988 - - hypothetical protein B456_013G043800 [Gossypium raimondii]

Gene co-expression network

sample Hb_000608_050 Hb_000608_050 Hb_005765_050 Hb_005765_050 Hb_000608_050--Hb_005765_050 Hb_000220_100 Hb_000220_100 Hb_000608_050--Hb_000220_100 Hb_148121_040 Hb_148121_040 Hb_000608_050--Hb_148121_040 Hb_000086_140 Hb_000086_140 Hb_000608_050--Hb_000086_140 Hb_000805_240 Hb_000805_240 Hb_000608_050--Hb_000805_240 Hb_004078_040 Hb_004078_040 Hb_000608_050--Hb_004078_040 Hb_000173_410 Hb_000173_410 Hb_005765_050--Hb_000173_410 Hb_001300_150 Hb_001300_150 Hb_005765_050--Hb_001300_150 Hb_000454_090 Hb_000454_090 Hb_005765_050--Hb_000454_090 Hb_008841_020 Hb_008841_020 Hb_005765_050--Hb_008841_020 Hb_005765_050--Hb_004078_040 Hb_000359_060 Hb_000359_060 Hb_000220_100--Hb_000359_060 Hb_000220_100--Hb_000173_410 Hb_002045_070 Hb_002045_070 Hb_000220_100--Hb_002045_070 Hb_000220_100--Hb_000454_090 Hb_033594_080 Hb_033594_080 Hb_000220_100--Hb_033594_080 Hb_000638_250 Hb_000638_250 Hb_148121_040--Hb_000638_250 Hb_004696_080 Hb_004696_080 Hb_148121_040--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_000403_060 Hb_000403_060 Hb_148121_040--Hb_000403_060 Hb_000733_200 Hb_000733_200 Hb_000086_140--Hb_000733_200 Hb_000365_270 Hb_000365_270 Hb_000086_140--Hb_000365_270 Hb_017895_040 Hb_017895_040 Hb_000086_140--Hb_017895_040 Hb_000221_190 Hb_000221_190 Hb_000086_140--Hb_000221_190 Hb_005867_090 Hb_005867_090 Hb_000086_140--Hb_005867_090 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_000805_240--Hb_004696_080 Hb_000805_240--Hb_152784_010 Hb_004078_040--Hb_000359_060 Hb_000393_020 Hb_000393_020 Hb_004078_040--Hb_000393_020 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_004078_040--Hb_000454_090 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.83485 11.009 16.4423 26.8626 7.88192 10.2503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1447 23.0628 22.6502 11.343 9.56712

CAGE analysis