Hb_000403_060

Information

Type -
Description -
Location Contig403: 63838-74265
Sequence    

Annotation

kegg
ID vvi:100254399
description probable ATP synthase 24 kDa subunit, mitochondrial
nr
ID XP_002279389.1
description PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
swissprot
ID Q9SJ12
description Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1
trembl
ID D7SW76
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g01740 PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable atp synthase 24 kda mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39957: 63896-74096
cDNA
(Sanger)
(ID:Location)		 045_K03.ab1: 65846-74050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000403_060 0.0 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
2 Hb_000175_340 0.0690359103 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
3 Hb_157022_010 0.077250731 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
4 Hb_000638_250 0.0782851801 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_007044_120 0.0796977907 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
6 Hb_148121_040 0.0807859458 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_055062_020 0.0816618395 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
8 Hb_000815_320 0.0819152371 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
9 Hb_000236_040 0.0820360842 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
10 Hb_001579_030 0.0831928238 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
11 Hb_004696_080 0.0834448122 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
12 Hb_000317_390 0.0842939911 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
13 Hb_024439_010 0.0845804385 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
14 Hb_026889_030 0.0864738106 - - protein with unknown function [Ricinus communis]
15 Hb_004889_020 0.0893748378 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
16 Hb_118419_010 0.0894818357 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
17 Hb_004109_170 0.0913348884 - - PREDICTED: probable ribokinase [Jatropha curcas]
18 Hb_000580_090 0.0914544368 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
19 Hb_000046_320 0.0919398792 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_001123_130 0.0924078324 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000403_060 Hb_000403_060 Hb_000175_340 Hb_000175_340 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_007044_120 Hb_007044_120 Hb_000403_060--Hb_007044_120 Hb_148121_040 Hb_148121_040 Hb_000403_060--Hb_148121_040 Hb_055062_020 Hb_055062_020 Hb_000403_060--Hb_055062_020 Hb_003813_030 Hb_003813_030 Hb_000175_340--Hb_003813_030 Hb_050514_010 Hb_050514_010 Hb_000175_340--Hb_050514_010 Hb_026889_030 Hb_026889_030 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_000175_340--Hb_007044_120 Hb_004889_020 Hb_004889_020 Hb_157022_010--Hb_004889_020 Hb_001484_070 Hb_001484_070 Hb_157022_010--Hb_001484_070 Hb_000236_040 Hb_000236_040 Hb_157022_010--Hb_000236_040 Hb_157022_010--Hb_026889_030 Hb_000827_050 Hb_000827_050 Hb_157022_010--Hb_000827_050 Hb_152784_010 Hb_152784_010 Hb_000638_250--Hb_152784_010 Hb_000103_320 Hb_000103_320 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_004696_080 Hb_004696_080 Hb_000638_250--Hb_004696_080 Hb_021596_090 Hb_021596_090 Hb_007044_120--Hb_021596_090 Hb_007044_120--Hb_148121_040 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960 Hb_000608_050 Hb_000608_050 Hb_148121_040--Hb_000608_050 Hb_148121_040--Hb_000638_250 Hb_148121_040--Hb_004696_080 Hb_148121_040--Hb_152784_010 Hb_005054_210 Hb_005054_210 Hb_148121_040--Hb_005054_210 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_003849_130 Hb_003849_130 Hb_055062_020--Hb_003849_130 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_055062_020--Hb_000261_140 Hb_055062_020--Hb_026889_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.0752 17.0334 57.5341 58.6597 43.5641 41.8388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.3668 90.7372 81.937 34.0902 23.6237

CAGE analysis