Hb_000236_040

Information

Type -
Description -
Location Contig236: 37691-46342
Sequence    

Annotation

kegg
ID rcu:RCOM_1017980
description hypothetical protein
nr
ID XP_012071100.1
description PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01098 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24650: 37682-46272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_040 0.0 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
2 Hb_000827_050 0.0566251233 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
3 Hb_000205_090 0.0656791398 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
4 Hb_001633_050 0.0664403515 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
5 Hb_002014_020 0.0719334826 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
6 Hb_003304_020 0.0743724348 - - Polyadenylate-binding protein RBP47C [Glycine soja]
7 Hb_004058_030 0.0775090178 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
8 Hb_050514_010 0.0785593414 - - hypothetical protein 29 [Hevea brasiliensis]
9 Hb_004109_170 0.0791450925 - - PREDICTED: probable ribokinase [Jatropha curcas]
10 Hb_003813_030 0.0797997702 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
11 Hb_003052_190 0.0804154076 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
12 Hb_157022_010 0.0812841122 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
13 Hb_000003_230 0.0814327536 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
14 Hb_005539_280 0.0817562005 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
15 Hb_000403_060 0.0820360842 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
16 Hb_002995_020 0.0823882857 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
17 Hb_003582_060 0.0834049288 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
18 Hb_000505_040 0.0841806901 - - -
19 Hb_001221_210 0.084975885 - - thiF family protein [Populus trichocarpa]
20 Hb_003086_150 0.0867178169 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]

Gene co-expression network

sample Hb_000236_040 Hb_000236_040 Hb_000827_050 Hb_000827_050 Hb_000236_040--Hb_000827_050 Hb_000205_090 Hb_000205_090 Hb_000236_040--Hb_000205_090 Hb_001633_050 Hb_001633_050 Hb_000236_040--Hb_001633_050 Hb_002014_020 Hb_002014_020 Hb_000236_040--Hb_002014_020 Hb_003304_020 Hb_003304_020 Hb_000236_040--Hb_003304_020 Hb_004058_030 Hb_004058_030 Hb_000236_040--Hb_004058_030 Hb_050514_010 Hb_050514_010 Hb_000827_050--Hb_050514_010 Hb_004109_170 Hb_004109_170 Hb_000827_050--Hb_004109_170 Hb_000260_030 Hb_000260_030 Hb_000827_050--Hb_000260_030 Hb_000003_230 Hb_000003_230 Hb_000827_050--Hb_000003_230 Hb_000827_050--Hb_000205_090 Hb_000205_090--Hb_004109_170 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_001633_050--Hb_004116_190 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_002995_020 Hb_002995_020 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030 Hb_031862_100 Hb_031862_100 Hb_002014_020--Hb_031862_100 Hb_004889_010 Hb_004889_010 Hb_002014_020--Hb_004889_010 Hb_034380_020 Hb_034380_020 Hb_002014_020--Hb_034380_020 Hb_001218_030 Hb_001218_030 Hb_002014_020--Hb_001218_030 Hb_001828_150 Hb_001828_150 Hb_002014_020--Hb_001828_150 Hb_003304_020--Hb_000003_230 Hb_003304_020--Hb_004058_030 Hb_003582_060 Hb_003582_060 Hb_003304_020--Hb_003582_060 Hb_007676_080 Hb_007676_080 Hb_003304_020--Hb_007676_080 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_004058_030--Hb_000003_230 Hb_004058_030--Hb_002681_100 Hb_006615_240 Hb_006615_240 Hb_004058_030--Hb_006615_240 Hb_004058_030--Hb_003582_060 Hb_000684_380 Hb_000684_380 Hb_004058_030--Hb_000684_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.04852 2.2718 5.80735 4.23925 3.66171 3.49255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69441 8.58676 7.64081 5.34294 3.08099

CAGE analysis