Hb_007676_080

Information

Type transcription factor
Description TF Family: C3H
Location Contig7676: 119167-131184
Sequence    

Annotation

kegg
ID pop:POPTR_0001s05070g
description POPTRDRAFT_829302; hypothetical protein
nr
ID XP_012088179.1
description PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
swissprot
ID Q7F8R0
description Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1
trembl
ID A0A067JK64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26709 PE=4 SV=1
Gene Ontology
ID GO:0003723
description zinc finger ccch domain-containing protein 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57472: 119216-131264
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007676_080 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
2 Hb_000003_230 0.0388584244 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
3 Hb_003304_020 0.0617626954 - - Polyadenylate-binding protein RBP47C [Glycine soja]
4 Hb_002169_040 0.0627141231 - - unknown [Populus trichocarpa]
5 Hb_000390_300 0.0628350872 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
6 Hb_008494_100 0.0649525563 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
7 Hb_006573_190 0.0693698248 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
8 Hb_003582_060 0.0701866061 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
9 Hb_004058_030 0.0707106515 - - PREDICTED: stomatin-like protein 2, mitochondrial [Jatropha curcas]
10 Hb_004586_420 0.0727370086 - - PREDICTED: uncharacterized protein LOC105630659 [Jatropha curcas]
11 Hb_000431_170 0.0729159825 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
12 Hb_004934_100 0.073939895 - - conserved hypothetical protein [Ricinus communis]
13 Hb_024439_010 0.074565543 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
14 Hb_004889_010 0.0749322719 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
15 Hb_000340_180 0.076059323 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
16 Hb_005496_140 0.0766890153 - - conserved hypothetical protein [Ricinus communis]
17 Hb_031862_100 0.0768102738 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000081_160 0.0769865124 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
19 Hb_000200_020 0.0771973516 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
20 Hb_000566_120 0.0773716925 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_007676_080 Hb_007676_080 Hb_000003_230 Hb_000003_230 Hb_007676_080--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_007676_080--Hb_003304_020 Hb_002169_040 Hb_002169_040 Hb_007676_080--Hb_002169_040 Hb_000390_300 Hb_000390_300 Hb_007676_080--Hb_000390_300 Hb_008494_100 Hb_008494_100 Hb_007676_080--Hb_008494_100 Hb_006573_190 Hb_006573_190 Hb_007676_080--Hb_006573_190 Hb_000003_230--Hb_003304_020 Hb_003582_060 Hb_003582_060 Hb_000003_230--Hb_003582_060 Hb_000003_230--Hb_006573_190 Hb_006615_240 Hb_006615_240 Hb_000003_230--Hb_006615_240 Hb_004058_030 Hb_004058_030 Hb_000003_230--Hb_004058_030 Hb_003304_020--Hb_004058_030 Hb_003304_020--Hb_003582_060 Hb_003052_190 Hb_003052_190 Hb_003304_020--Hb_003052_190 Hb_002681_100 Hb_002681_100 Hb_003304_020--Hb_002681_100 Hb_000985_030 Hb_000985_030 Hb_002169_040--Hb_000985_030 Hb_005269_070 Hb_005269_070 Hb_002169_040--Hb_005269_070 Hb_156279_020 Hb_156279_020 Hb_002169_040--Hb_156279_020 Hb_001489_080 Hb_001489_080 Hb_002169_040--Hb_001489_080 Hb_002169_040--Hb_000003_230 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_000390_300--Hb_006615_240 Hb_000390_300--Hb_006573_190 Hb_008847_030 Hb_008847_030 Hb_008494_100--Hb_008847_030 Hb_004586_420 Hb_004586_420 Hb_008494_100--Hb_004586_420 Hb_008494_100--Hb_000003_230 Hb_000340_180 Hb_000340_180 Hb_008494_100--Hb_000340_180 Hb_000566_120 Hb_000566_120 Hb_006573_190--Hb_000566_120 Hb_006573_190--Hb_004586_420 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44004 4.63553 8.52346 9.59768 6.36206 8.9138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.182 16.3976 10.475 9.89853 7.48436

CAGE analysis