Hb_000566_120

Information

Type -
Description -
Location Contig566: 93568-100123
Sequence    

Annotation

kegg
ID pop:POPTR_0003s16760g
description POPTRDRAFT_554754; hypothetical protein
nr
ID XP_011020791.1
description PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GZM9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s16760g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49048: 96001-96233 , PASA_asmbl_49049: 98328-98690 , PASA_asmbl_49050: 93637-99906
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000566_120 0.0 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
2 Hb_000045_310 0.0461497194 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
3 Hb_006573_190 0.0534554127 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
4 Hb_001931_010 0.060020666 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
5 Hb_012799_170 0.062872878 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
6 Hb_010361_010 0.0661558358 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
7 Hb_000390_300 0.0672848497 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
8 Hb_001279_080 0.0683310456 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
9 Hb_008071_020 0.0699437083 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
10 Hb_024650_070 0.0718495185 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
11 Hb_006326_040 0.071899028 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002609_200 0.0722892259 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_000003_230 0.0741232178 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
14 Hb_045003_010 0.0742334542 - - Stomatin-1, putative [Ricinus communis]
15 Hb_008841_020 0.0746611886 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
16 Hb_000347_240 0.0748064505 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
17 Hb_000505_130 0.076100572 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
18 Hb_017895_040 0.0764452656 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
19 Hb_000599_250 0.0771380863 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
20 Hb_007676_080 0.0773716925 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_000566_120 Hb_000566_120 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_006573_190 Hb_006573_190 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_012799_170 Hb_012799_170 Hb_000566_120--Hb_012799_170 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_028396_010 Hb_028396_010 Hb_000045_310--Hb_028396_010 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_008071_020 Hb_008071_020 Hb_000045_310--Hb_008071_020 Hb_000045_310--Hb_001931_010 Hb_000003_230 Hb_000003_230 Hb_006573_190--Hb_000003_230 Hb_004586_420 Hb_004586_420 Hb_006573_190--Hb_004586_420 Hb_003582_060 Hb_003582_060 Hb_006573_190--Hb_003582_060 Hb_001828_150 Hb_001828_150 Hb_006573_190--Hb_001828_150 Hb_006573_190--Hb_000390_300 Hb_001931_010--Hb_008071_020 Hb_006326_040 Hb_006326_040 Hb_001931_010--Hb_006326_040 Hb_001341_150 Hb_001341_150 Hb_001931_010--Hb_001341_150 Hb_000505_130 Hb_000505_130 Hb_001931_010--Hb_000505_130 Hb_001279_080 Hb_001279_080 Hb_001931_010--Hb_001279_080 Hb_005167_010 Hb_005167_010 Hb_012799_170--Hb_005167_010 Hb_003622_030 Hb_003622_030 Hb_012799_170--Hb_003622_030 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_002540_080 Hb_002540_080 Hb_012799_170--Hb_002540_080 Hb_000329_200 Hb_000329_200 Hb_010361_010--Hb_000329_200 Hb_010361_010--Hb_024650_070 Hb_000599_250 Hb_000599_250 Hb_010361_010--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_010361_010--Hb_004934_100 Hb_010361_010--Hb_000045_310 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_024439_010 Hb_024439_010 Hb_000390_300--Hb_024439_010 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62479 6.45043 17.089 20.2849 10.9326 12.2573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.973 29.9919 17.8802 12.8392 17.1549

CAGE analysis